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Hi clinker users,
I am running into some issues with the program, and I don't really understand why / how this is happening. The program seems to be mishandling some genes that should be showing so…
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Hello,
I have 2 genomes in fna, this is my script:
source activate enrichm_0.5.0
export ENRICHM_DB=/path_to_enrichm_db
enrichm annotate \
--output /path_to_output \
--genome_directory /pat…
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Dear Heaton
Thank you for the development for this nice tool. I've been totally enjoyed to analyze my samples with Souporcell.
However, recently, I've got very unique sample.
It is embryo cells …
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Hello,
I'm having an issue running this pipeline with a new genome index. This install works very well when aligning to human, but with a STAR index/genome/GTF file for another species it fails afte…
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I receive the following error message when when I try to run TEdenovo on my assembly
```
Fatal error: Exit code 1 ()
cat: /home/jeremy/galaxy/tools/Pipeline/REPET/WORK/genome_Blaster_Grouper_Map/…
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Cell by bin
Visualize in higlass
Cell by peaks (in BED + snap files)
Annotated peaks (genomic intervals) per cell
Genome-wide (not necessarily tied to a gene)
Our Pipelines:
- [ ] We need to cre…
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Following the guidelines in https://github.com/SparseRooflineBenchmark/SparseRooflineBenchmark/issues/16, let's create some smaller issues surrounding problem set generation. The following notes may b…
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PLSDB currently hosts only bacterial plasmids. WOuld it be within the project's scope to also add plasmids of Archaea?
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Running the Pipeline-16S using the following command, nextflow run, but instead of producing the output we expected according with the information in the webpage, it produced several subdirectories th…
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Hello!
I'm new in the field and I need to use Chewbbaca In the end of the analysis, I get in a visualization folder, a file, cgMLST.tsv. Is the values in this file represent the allele distance of e…