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![image](https://github.com/nerve-bio/NERVE/assets/143639717/6bee2a2e-760b-4586-a981-6aed93e8d273)
Please See the image and kindly instruct what to do in this kind problem. Why is the output file a…
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# Issue Report
## Please describe the issue:
Hello, I received a segmentation fault error when running dorado correct (v0.7.3). The data I am trying to correct is duplex basecalled reads. I have…
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Just ran filter_input.py and obtained results for the following files.
-rw-rw-r-- 1 9960669 Jun 29 16:20 a_1.out
-rw-rw-r-- 1 9955350 Jun 29 16:23 a_2.out
-rw-rw-r-- 1 12052942 Jun 29 16:14 b_1.o…
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My circlator (Circlator version: 1.5.5) run with the following command was running for 3 days and then stopped and never continued. Here is the last part of the log file:
Command:
```
circlator a…
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Hi Will,
Thanks for your great tool!
I was trying to use mokapot in combination with sage outputs to look at enzyme free peptidomics samples. Unfortunately, when I run this with a simple subset an…
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I e-mailed the senior author of your paper and haven't heard back so I'm asking here...
1) Is there a way to run LSA on fasta files instead of fastq?
2) Does LSA use the quality information in the fas…
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Hi Arang,
My assembly was constructed with HiFi reads only, and I try to use Merqury to evaluate my assembly, but the error I have encountered:
```shell
/nfs_fs/nfs3/jiezhang/sunwu_genome/softwar…
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Dear Mikhail
`contig_3` in `assembly_graph.gfa` is missing in `assembly.fasta`:
```shell
$ grep ">" assembly.fasta
>contig_1
>contig_2
```
Preview of `assembly_graph.gfa`:
```
H …
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When I was running ScanNeo2, several samples encountered errors during the VEP annotation process, specifically for the main task of SNVs. The following error occurred for all of them.
localrule ann…
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I'm running into this issue for the first time and I'm not sure how to address it:
[FATAL] Unable to find required file, references.fasta, for pipeline, 'Annotate reads'
Any suggestions?