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Dear bcbio developers,
For some of the species that we work on we are now starting to receive significant numbers of long read sequenced samples.
The samples are sequenced using nanopore, PacBio …
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Hello! Thank you for providing such a useful software.
My original hic data are all paired reads of equal length of 150bp. I hope that the simulated data are also regular 150bp paired reads.
Bu…
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I've been running canu on a fish genome ~600 MB, and now I keep getting Illegal division by zero... I'm using a linux server and canu snapshot v2.3. Here's my command:
`/data/canu/build/bin/canu…
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I'm using version 1.42.0 of nanoplot. Recently, I noticed that in my NanoStats.txt file, I'm generating qualities starting from Q10, whereas a week ago, I had qualities starting from Q5. I haven't cha…
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Can DIPAN be used in long-read transcriptomics such as nanopore reads?
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Dear Developers, hello!
There are some projects using PacBio single-molecule long-read sequencing to analyze full-length transcriptome, but the raw data is in a bam type file and has to be changed in…
wu116 updated
2 months ago
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Hi @gbouras13 ,
I use hybracter to assemble bacterial genomes and plasmids from long read sequencing. I want to assemble single plasmids from long read sequencing but hybracter does not work with o…
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Hi,
We are trying to analyse variants in the data obtained from oxford nanopore can we use MToolBox to analyse such data, is long read sequencing data supported by MToolBox?
Thanks and regards,…
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## Description
The calculations done by the `QualityControllerService` are expensive, meaning that usage of the methods in the web services, e.g. CiGRID, adds quite a lot of latency. As an example …
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In your original papaer, the performance of L-GIREMI are only tested using a pacbio dataset . L-GIREMI is applicable to nanopore long read transciptome sequencing ?