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Hello,
I have been running an analysis in Seurat 5 that is partially run on a local machine and a remote server, and I've been trying to work out how to change the address of where the BP cell gen…
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Hello,
I am encountering an error when trying to merge two Seurat Objects after using tidyseurat's filter(). The error can only be produced when the attached data's "integrated" assay is present. …
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Hello, I got an error when I installed Seurat package on Linux server. It read as follows:
`Error: objects ‘winProgressBar’, ‘getWinProgressBar’, ‘setWinProgressBar’ are not exported by 'namespace:ut…
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Hi,
I faced the issue with Seuratv5, when it produces a VisiumV2 class. It failed to convert this seurat object to spata2 object.
`spata2_object_zh1019T1
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Some people are having issues due to them installing the correct Seurat version (v4) but pulling (I guess from conda) SeuratObject v5. This works with seurat due to compat. options but makes beyondcel…
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I'm following [Bassez](https://carmonalab.github.io/ProjecTILs_CaseStudies/Bassez_BC.html) tutorial. However, during classification step I encounter the following error:
```
> DefaultAssay(ref_cd8…
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Hello,
I am using the Seurat V5. After I merged my 4 seurat objects, the FindVariableFeatures() function produces error like this:
Error in `VariableFeatures()`:
! No variable features found
![i…
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I have a dataset spanning several brain regions, each region having 15-20 cell types. For a single brain region, I have created an independent `misc` slot in my Seurat object for each meta cell type:
…
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I recently had to reinstall CellChat on a new device. While trying to conduct analysis on CellChat objects created using CellChat 2.1.0 from Seurat objects, I'm getting a new error whenever I try to p…
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Performance testing was performed comparing fetch_metadata and fetch_reduction to FetchData for Seurat, SingleCellExperiment, and anndata objects, and the performance of fetch_metadata and fetch_reduc…