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Hi,this is ZY.We did a summary on the quantity and distribution of CNVs and CNV regions . And I took your advice to visualize the ratio.txt file.But still doubted.
**R script:FREEC_ratio2Absolute.R…
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### Operating System
CentOS 7
[DEMO.wf-human-cnv-report_qdnaseq.pdf](https://github.com/epi2me-labs/wf-human-variation/files/15419413/DEMO.wf-human-cnv-report_qdnaseq.pdf)
[DEMO.wf-human-cnv-repo…
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pbSV CNV calling
WisecondorX?
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@tyamaguchi-ucla @yashpatel6
DELLY also has somatic CNV calling. Any reason we opted not to add this before? If no, we can add this as well.
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Hello @freeseek
Is this a known issue that coordinates for CNV loci may be incorrectly/differently presented via SourceSeq mapping workflow?
Since I have large set of chips and samples to analy…
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Hi I have a vcf with CNV (copy number variants) generated from CNVnator and I want to annotate it as gene-based. Could you please help me with this?
Thank you
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@FeiQin92
Hi,FeiQin
Good job and I am very interested in your research, but I have some questions. If I have a CNV matrix of scDNA-seq, can I use FLCNA to identify tumor subclones?
I am looki…
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Currently samples are booked in Epic with both the SNV and CNV clinical indications. To allow eggd_dias_batch to correctly set off reports, the CNV indications need to be stripped off.
This command…
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### What happened?
I am trying to use the docker container ontresearch/wf-cn or ontresearch/wf-human-variation, but it did not work, the error as below:
bash: nextflow: command not found
### Opera…
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```
infercnv_obj = CreateInfercnvObject(raw_counts_matrix = counts,
annotations_file = anno,
delim="\t",
…