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Hi,
I have a matched RNA-seq / WGS - seq whole-blood dataset with other data indicating high lymphocyte burden. I used mixcr analyze shotgun as recommended with both datasets.
I have a general…
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Hello!
Just wondered - of the fa output files generated from TRUST4 which would be the one to upload to IMGT high V-quest? We use this in an in-house pipeline and like the extra information this c…
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**Describe the bug**
```
mdata.write('mdata..h5mu')
```
```
---------------------------------------------------------------------------
OSError Traceback (mos…
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By default, the model returns ranks (for fixed peptides), and scores (which are presumably comparable between peptides). I wish to recover a probability that a peptide binds with a particular TCR. Hav…
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Starting to think about this in the context of generating a lot of 10x VDJ data... it seems we will want to (eventually) have a way for `Clone`s to contain `cell`s (see https://github.com/airr-communi…
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When downloading this file ('iatlas-ici-features.tsv') from the Synapse portal it's not given in the description what the meaning of the columns are.
There seem to be columns linked to various stu…
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Hello. I started with the [Loading 10x Genomics Data](https://immunarch.com/articles/web_only/load_10x.html) tutorial, downloaded the CSV files from [10X website](https://support.10xgenomics.com/singl…
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Hi,
First, thanks again for the nice package you have provided for repertoire analysis.
I want to analyze shared clones between patients and have come across an inconsistency in the visual represe…
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### Description of the bug
Thanks for the great tool, it offers a really wide range of analysis in a convenient way!
I would like to analyze bulk (untargeted) blood RNAseq data using your pipeline. …
loipf updated
2 months ago
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We need examples of the types of experiments and queries which are going to be executed against `data-refinery` data.
These examples should include the perspectives from bioinformaticist, bench re…