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hi there, a bit confused about the input to this, particularly the --ref setting
are these to be the same genomes used to perform pseudoalignment on, or? are they supposed to be bins?
sorry if i…
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![upsetr](https://github.com/user-attachments/assets/d279210e-4f0d-47ed-9be5-56a190de255d)
Sorry for this question, but could someone help me understand this graph?
P.S.: IDs with "_REF" are ref…
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Hi, I decided to try configure [CHM13](https://github.com/marbl/CHM13#v11) reference, but didn't manage to do it.
* I presses "+" button and start filling the fields
* When editing **new** genome,…
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User created a group with the output of similar genome finder; it included a bad genome that then was suppressed from any views of the genome group, but was still present in the group so that a CodonT…
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When working with a custom genome, I was able to successfully index the genome. However, when I use snap-pre it is unclear what to set as the genome name. I assumed it was the output prefix after inde…
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Thank you very much for your suggestion. We only used hifi data, and after adding the -l 0 parameter, the result showed that the genome was 10M in multiple places and contig increased. Based on this r…
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How do I know the result of minigraph-cactus output vcf, the corresponding position on the reference genome is in the corresponding position of the respective genome
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During genome indexing, the process stops at the stage of inserting junctions into the genome indices. Also, SA file is not created during SA packing process.
100gb of ram is available. The hard di…
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Hi there,
I followed the steps one by one, i am stuck with the star alignment part. It asks me to generate a genome index file and I dont know how to do it. Can u give me advice to overcome this.
T…
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Hello, @alexdobin
I have 6-core processor and 32 RAM.
Tried to generate genome indexes, but it failed.
I read a lot off themes with similar problem, but none of solutions helped.
I also tried to…