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Hi,
I used parsnp for closed genomes with defined numbers of plasmids and recognized that the calculated genome size in the log file deviated from the given size of the input. Unfortunately this infl…
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Hi, thanks for this software. I used it on a directory of Nanopore fastq files and it worked beautifully. But when running on a directory of PacBio fastq files I keep getting an error. This error is a…
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I love your tool. Thanks for making it.
I am using it with a collection of WGS Shigella isolates and some of the plasmid descriptions have multiple hits on NCBI. Is there a way I can figure out w…
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### Describe your feature request precisely
QR codes integrated into the main text area of experiments or resources.
The idea is that when one researcher wants to show an experiment to another, b…
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[INFO] Gel Lanes Fit
[INFO] Gel Lanes Fit 1.0.5
[INFO] Loading gel-lanes-fit\data\2019_6_19\saved-state.bak ...
[INFO] Could not find previously saved state
[INFO] Loading gel-lanes-fit\data\2019_…
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Hi
I have noticed the problem of #138 quite some times in many bacteria ncluding E coli, and Clostridia. Plasmids found in Illumina assembly and detected in the lab (!), disappeared in Unicycler …
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I was wondering if you are aware of any usage of CONCOCT for isolate sequencing samples? Could this be a potential method for identifying plasmids?
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Hey, I was assembling IncF plasmids lately. I wanted to do a figure of a region responsible for conjugative transfer and these plasmids have more genes disrupted by ISs. It would be nice if there was …
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Users should be able to download a list of strains or plasmids as a file. Start with PDF, consider other file types like CSV.
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Hi,
When classifying some Refseq sequences I noticed that some plasmids are being classified as virus. For example the reference assembly of Klebsiella pneumoniae (https://www.ncbi.nlm.nih.gov/data…