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Running instrain on 272 metagenomes:
```
Scaffold to bin was made using .stb file
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..:: inStrain compare Step 1. Load data ::..
**********…
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Hi,
I'm coming across this repeatable error. It only occurs when running diamond on comparatively large shotgun metagenomes (40Gbp+), or more particularly, when the subset of reads in the metagenom…
wwood updated
3 years ago
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Hi all,
I am currently using OPERA-MS. I run the test files and works perfectly but using my data I do not have a final contings.fasta, conting_info.txt or assembly.stats.
The log.err indicates…
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I have been trying to use this program with singularity. I thought all the dependencies were going to be inside that package. I'm not sure how to install vmatch2 with singularity. Im including my comm…
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Hello,
I have 3 metagenomes on which I am trying to run metaviralspades. Two of them completed without issue, but the third has given me a few problems. The first time I ran it, it timed out on my …
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Hi,
I'm interested in using Micop for detection of fungal reads.
However, it has not reported a single (even false positive) hit across many metagenomes so far. So I tried fungal input, which al…
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Hello,
Thank you very much for the contribution made by the SPAdes software development team to genome assembly. The software performed well.I,now, want to understand the related algorithms of the SP…
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Hello, I have been trying to find spHMMs for my protein family of interest using metabgc build, but I haven't been able to successfully complete a metabgc build run. I have prepared synthetic metageno…
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Hello,
I'd like to report strange behavior of parsing hmm outputs of rubisco. There are hits in _rubisco_form_III.hmm.total.hmmsearch_result.txt_ (score threshold = 450). However, if I check the _HMM…
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Hello! I managed to get the full Atlas pipeline to work by restricting resource memory, but I was curious if I could use gtdb markers for taxonomic annotation using the same restricted memory availabi…