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AlexsLemonade
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refinebio
Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.
https://www.refine.bio/
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Fix failing smasher tests: Process completed with exit code 8
#3379
arkid15r
closed
9 months ago
0
Dataset Context Manager
#3378
nozomione
closed
9 months ago
0
Production Deploy
#3377
davidsmejia
closed
10 months ago
0
Slow down batch job deregistering process
#3376
arkid15r
closed
10 months ago
0
Production Depoly
#3375
davidsmejia
closed
10 months ago
0
Survey Transcritome Indices for new airway pathogens
#3374
davidsmejia
closed
9 months ago
1
Dataset Request SRP154352
#3373
alexslemonade-bot
opened
10 months ago
0
Update smasher email templates: use new ALSF address
#3372
arkid15r
closed
10 months ago
0
Update ALSF Address In Email
#3371
davidsmejia
closed
9 months ago
2
Update supported_microarray_platforms.csv to fix GPL24242 internal accession field
#3370
jaclyn-taroni
closed
10 months ago
0
Update foreman utils.py: use list comprehension for collecting hung/lost jobs
#3369
tosemml
closed
10 months ago
2
Use CI/CD local Docker builders
#3368
arkid15r
closed
10 months ago
0
Rename illumina batch job template
#3367
arkid15r
closed
10 months ago
0
Add new airway pathogens to organism-strain mapping file
#3366
jaclyn-taroni
closed
10 months ago
0
Add new pathogens to organism-strain mapping file
#3365
jaclyn-taroni
closed
10 months ago
0
Increase launch templates /dev/xvda volume size
#3364
arkid15r
closed
10 months ago
0
Update batch job definitions clean up process
#3363
arkid15r
closed
10 months ago
1
TXImport Eligibility - Check if SHORT and LONG indices exist
#3362
davidsmejia
closed
10 months ago
1
Tracking Data Requests
#3361
davidsmejia
closed
9 months ago
3
Populate jobs worker_version field with the system version
#3360
arkid15r
closed
10 months ago
0
Clean up AWS Batch job definition list
#3359
arkid15r
closed
10 months ago
0
SYSTEM_VERSION is empty string
#3358
davidsmejia
closed
10 months ago
0
Add e2e tests troubleshooting changes
#3357
arkid15r
closed
10 months ago
0
Dataset Request GSE227909
#3356
alexslemonade-bot
opened
10 months ago
0
add s3 to sra urls to check
#3355
davidsmejia
closed
10 months ago
0
Update deploy configuration
#3354
arkid15r
closed
10 months ago
0
Dataset Request SRP161704
#3353
alexslemonade-bot
opened
10 months ago
0
Use unique names for docker renv loading commands
#3352
arkid15r
closed
10 months ago
0
Processor job failed due to UnicodeDecodeError
#3351
arkid15r
opened
10 months ago
0
Update terraform configuration
#3350
arkid15r
closed
10 months ago
2
Downloader jobs tests failing
#3349
arkid15r
closed
8 months ago
1
Add debug lines to e2e tests
#3348
davidsmejia
closed
10 months ago
0
psycopg2.OperationalError: server closed the connection unexpectedly
#3347
arkid15r
opened
11 months ago
0
adjust asserted counts for missing AE samples
#3346
davidsmejia
closed
11 months ago
0
Fix API server user data error
#3345
arkid15r
closed
11 months ago
0
Refactor sample_protocols update
#3344
davidsmejia
closed
11 months ago
0
Dataset Request SRP095993
#3343
alexslemonade-bot
opened
11 months ago
0
Dataset Request SRP095993
#3342
alexslemonade-bot
opened
11 months ago
0
Fix for SRA file report API url construction
#3341
davidsmejia
closed
11 months ago
0
Docker cache miss during deploy
#3340
arkid15r
opened
11 months ago
0
Fix test_create_compendia_danio assertion error
#3339
arkid15r
closed
8 months ago
1
Update SraSurveyor experiment generation method
#3338
arkid15r
closed
11 months ago
0
Bump certifi from 2022.12.7 to 2023.7.22 in /foreman
#3337
dependabot[bot]
closed
8 months ago
2
Bump certifi from 2022.12.7 to 2023.7.22 in /api
#3336
dependabot[bot]
closed
8 months ago
2
Correct SRA surveyor method typo
#3335
arkid15r
closed
11 months ago
0
prevent age from being set as string, adds test
#3334
davidsmejia
closed
11 months ago
0
e2e test throws "value must be a decimal number" error
#3333
arkid15r
closed
11 months ago
1
API server won't start after staging deploy
#3332
arkid15r
closed
11 months ago
0
Fix staging deploy
#3331
arkid15r
closed
11 months ago
0
Fix staging deploy process
#3330
arkid15r
closed
11 months ago
0
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