FredHutch VISCtemplates issues

FredHutch / VISCtemplates

Tools for writing reproducible reports at VISC

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Auto-calculate unit test coverage on PRs and view results on Codecov

#250 slager opened 1 week ago
2
Fix error running package-loading-and-options chunk interactively

#249 slager opened 2 weeks ago
1
Clean up invalid ORCID placeholder generated by usethis that throws error on R version 4.5.x

#248 slager closed 2 weeks ago
1
invalid ORCID error on r-devel

#247 slager closed 2 weeks ago
0
Get confirmation for ADCC Template language from lab

#246 lemireg opened 3 weeks ago
0
ldap warnings in Linux and macOS unit tests

#245 slager closed 1 month ago
1
Add automatic dates at the end of QC report

#244 Sal4321 closed 1 month ago
3
Add test for PRs to main staying in one analysis folder (or shared folders such as docs, tests, etc)

#243 lemireg closed 3 weeks ago
4
package-loading-and-options chunk generates error when run interactively

#242 mayerbry opened 2 months ago
2
Add quick links in package README for important files

#241 kelliemac opened 2 months ago
0
Add ref = "" in data package installation chunk

#240 kelliemac opened 2 months ago
0
Git hash for analysis repo in reproducibility tables

#239 kelliemac opened 2 months ago
0
Using git tags

#238 kelliemac opened 2 months ago
0
Create more vignettes with best practices for data processing, figures, tables, etc.

#237 kelliemac opened 2 months ago
4
Move example figure and table code in skeleton.Rmd to a figures and tables vignette

#236 kelliemac opened 2 months ago
0
Add visc_load_pdata() to visc_report skeleton.Rmd

#235 kelliemac opened 2 months ago
0
Update acknowledgements names

#234 kelliemac closed 3 weeks ago
0
Move README creation for PT reports to assay level

#233 kelliemac opened 2 months ago
1
remove name(s) from acknowledgements section for ppl who are not here

#232 lemireg opened 2 months ago
0
Update PR template to be more comprehensive and usable

#231 kelliemac opened 2 months ago
5
Update gitignore

#230 kelliemac closed 2 months ago
0
Change name of methods/ folder

#229 kelliemac opened 2 months ago
2
Update pull request template

#228 kelliemac opened 3 months ago
1
Add to "How to Contribute" checking git artifact that PDFs knit (and anything else someone should know/do when contributing)

#227 lemireg opened 3 months ago
1
latex template fix to allow flextable to render tables

#226 kelliemac closed 3 months ago
1
Suggest nested directory structure

#225 kelliemac opened 3 months ago
0
add unit tests for README changes

#224 slager closed 3 months ago
0
README.md instead of README.Rmd

#223 slager closed 3 months ago
0
Update git commit hash to short hash within Software-Package-Version-Information R chunk

#222 brborate closed 2 months ago
2
Add adcc test knit to ci

#221 slager closed 3 months ago
1
ADCC combined GTL and luciferase template

#220 lemireg closed 3 months ago
1
Add auxillary files (.aux, .toc, etc) to .gitignore

#219 asatofh closed 2 months ago
1
provide default CRAN mirror if missing in knitr R session

#218 slager closed 3 months ago
1
Release 1.3.2 patch release

#217 slager closed 3 months ago
0
Hotfix: change \newpage to \clearpage

#216 kelliemac closed 3 months ago
3
Error with install_load_cran_packages() and packages that have not been installed interactively

#215 kelliemac closed 3 months ago
0
Creates README.Rmd instead of README.md in new directory

#214 lemireg closed 3 months ago
3
Remove dependency on full tidyverse

#213 slager closed 3 months ago
1
Improve word doc formatting

#212 kelliemac opened 3 months ago
13
Make sure R packages leveraged using :: notation are included in reproducibility table

#211 kelliemac opened 3 months ago
0
Include standard R and R package references in template?

#210 kelliemac opened 3 months ago
0
Abbreviate commit hash in reproducibility table

#209 kelliemac closed 2 months ago
2
Fix file names referenced in generic report methods templates

#208 kelliemac opened 3 months ago
0
Autofilling / providing guidance on updating fields in project DESCRIPTION

#207 kelliemac opened 3 months ago
0
Release VISCtemplates 1.3.1 patch release

#206 slager closed 3 months ago
0
Re-flip header logos

#205 slager closed 3 months ago
2
Reconcile skeleton.Rmd files

#204 kelliemac closed 3 months ago
0
Reconcile differences between visc_empty and visc_report skeleton.Rmd files

#203 kelliemac closed 3 months ago
0
Update PT report naming practices

#202 kelliemac closed 3 months ago
0
Release VISCtemplates 1.3.0

#201 slager closed 3 months ago
0