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NVIDIA-Genomics-Research
/
GenomeWorks
SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
281
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76
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[sdk] Update the way we fetch CUB
#570
mimaric
closed
3 years ago
2
[sdk] Update CUB submodule to new URL and version 1.11.0
#569
ahehn-nv
closed
3 years ago
10
Merge branch 'master' (0.5.3) into `dev-v0.6.0`
#568
ohadmo
closed
3 years ago
0
[cudaextender] Add new cuadextender module to GW
#567
tijyojwad
closed
3 years ago
0
[cudapoa/cudaaligner] fix compute version to 60
#566
tijyojwad
closed
3 years ago
2
[cudamapper] Accuracy improvements through chaining
#565
edawson
opened
3 years ago
0
[cudaextender] Add CUDA Extender module with Ungapped X-Drop extension
#564
atadkase
closed
3 years ago
1
[cudamapper] Filtering for self mappings, identical overlaps, and highly-similar overlaps
#563
edawson
opened
3 years ago
0
[pygenomeworks] Fix counts of incorrect starts and ends in evaluate_paf
#562
edawson
closed
3 years ago
0
[common] Fixed a compiler warnings and a problem with CUDA 11
#561
ahehn-nv
closed
3 years ago
4
[pygenomeworks] evalute_paf does not properly report the number of incorrect starts/ends
#560
edawson
closed
3 years ago
0
[pygenomeworks] Support reading compressed PAF as input
#559
edawson
opened
3 years ago
0
[readme] clarify gcc support in README
#558
tijyojwad
closed
3 years ago
0
[pygenomeworks] Updates the evaluate_paf script.
#557
edawson
closed
3 years ago
0
[cudamapper]: Print in SAM format
#556
nvvishanthi
closed
3 years ago
9
Merge master branch (0.5.2) into dev-0.6.0
#555
ohadmo
closed
4 years ago
0
GenomeWorks compiling error
#554
asan-emirsaleh
closed
3 years ago
12
[cudaaligner] fixed an integer overflow
#553
ahehn-nv
closed
4 years ago
0
[cudapoa] improving cudaPOA performance
#552
r-mafi
closed
3 years ago
0
[cudapoa] GFA output
#551
edawson
closed
3 years ago
0
[cudamapper] IndexGPU correctly skips too short reads and does not copy basepairs twice
#550
mimaric
closed
4 years ago
0
[cudamapper] Let create_index() accept an IndexDescriptor
#549
nvvishanthi
closed
3 years ago
8
Anchmer experimentation
#548
edawson
closed
3 years ago
0
[cudapoa] reduce register count in cudapoa kernels
#547
tijyojwad
closed
3 years ago
0
[cudamapper] Added NVTX ranges and removed allocation logging from IndexGPU and Matcher
#546
mimaric
closed
4 years ago
0
[cudamapper] Minimizer uses thrust::inclusive_scan
#545
mimaric
closed
4 years ago
0
[cudamapper] Moved cudaStreamSynchronize for merged_basepairs_h after the call to SketchElementImpl::generate_sketch_elements()
#544
mimaric
closed
4 years ago
1
[cudamapper] Small improvements to IndexGPU
#543
ahehn-nv
closed
4 years ago
1
API [cudasequence] - A draft for an encoded sequence.
#542
ahehn-nv
closed
3 years ago
1
[common] Rename device_copy_n to reflect non-blocking behavior
#541
ahehn-nv
closed
3 years ago
1
API [cudaungappedextender] Add skeleton for API and API usage samples
#540
atadkase
closed
3 years ago
2
[cudamapper] Index should accept IndexDescriptor
#539
mimaric
closed
3 years ago
0
[hotfix][sdk] update cmake structure
#538
tijyojwad
closed
4 years ago
2
[sdk] update version number for branch
#537
tijyojwad
closed
4 years ago
0
[cudamapper] Create public interface for IndexDescriptor class
#536
nvvishanthi
closed
4 years ago
5
[release v0.5.0] Merge dev-v0.5.0 into master
#535
tijyojwad
closed
4 years ago
0
[docs] remove checked in cpp files as they're not available on github…
#534
tijyojwad
closed
4 years ago
0
[README] update pygw README
#533
tijyojwad
closed
4 years ago
0
[SDK] Test auto release
#532
ohadmo
closed
4 years ago
1
[cudamapper] Do not do self-mapping of reads
#531
mimaric
opened
4 years ago
1
[README] update pygw README
#530
tijyojwad
closed
4 years ago
0
[README] update README for new release
#529
tijyojwad
closed
4 years ago
0
[cudapoa] consolidate macros for banded alignment in single header
#528
tijyojwad
opened
4 years ago
0
[cudapoa] add description to error codes
#527
r-mafi
closed
3 years ago
0
[cudamapper] Throw custom exception when Index not found
#526
mimaric
closed
3 years ago
0
[cudamapper] Use stream callback functions to update Index state
#525
mimaric
opened
4 years ago
0
[cudamaper] Use events to sync generation and communication streams
#524
mimaric
opened
4 years ago
0
[cudamapper] Overlap index fetching with overlap computation
#523
mimaric
closed
3 years ago
9
[cudapoa] unify CUDA kernels in banded and adaptive NW
#522
r-mafi
closed
3 years ago
0
[cudapoa] unifying closely related numerous parameters related to POA graph length
#521
r-mafi
closed
4 years ago
1
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