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NVIDIA-Genomics-Research
/
GenomeWorks
SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
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76
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Renamed the asynchronous version of device_copy_n
#620
EpiSlim
closed
3 years ago
3
Can GenomeWorks work without CUDA? Can it work parallelize through MPI?
#619
yurivict
closed
3 years ago
1
[cudaaligner] Add support for extended CIGAR
#618
ahehn-nv
closed
3 years ago
0
[cmake] unify cmake cxx flags across GW
#617
tijyojwad
closed
3 years ago
5
[logging] reduce logging overhead
#616
tijyojwad
opened
3 years ago
0
[logging] remove spdlog submodule which resolves many issues
#615
tijyojwad
closed
3 years ago
1
[sdk] update min CUDA version to 10.0
#614
tijyojwad
closed
3 years ago
0
[cudapoa] check to ensure not all the base weights are zero
#613
r-mafi
closed
3 years ago
1
[cudaaligner] Fixed a bug in approximate alignment backtrace
#612
ahehn-nv
closed
3 years ago
1
[docs] refactor docs to cleanup repo look
#611
tijyojwad
closed
3 years ago
1
[cudamapper] fix substr api call in kmerization function
#610
tijyojwad
closed
3 years ago
1
[cmake] changed compute version in cudaaligner and cudapoa to 60
#609
r-mafi
closed
3 years ago
0
[cudapoa] add description and hint to error codes
#608
r-mafi
closed
3 years ago
2
[cudapoa] make maximum number of edges per node configurable
#607
r-mafi
opened
3 years ago
0
[cudapoa] adding new tests for different banding modes in NW
#606
r-mafi
closed
3 years ago
1
[cudapoa] adding new tests for different banding modes in NW
#605
r-mafi
closed
3 years ago
0
[cudapoa] throw an error in case all weights are zero
#604
r-mafi
closed
3 years ago
0
terminate called after throwing an instance of 'std::runtime_error'
#603
bellstwohearted
opened
3 years ago
1
[common] DevicePreallocatedAllocator allocates exactly the amount of memory requested, not more
#602
mimaric
closed
3 years ago
5
Updates to cudaextender ungapped_xdrop kernel
#601
gsneha26
closed
3 years ago
17
[common] DevicePreallocatedAllocator should allocate exactly the amount of memory requested, not more
#600
mimaric
closed
3 years ago
1
[docs]: Update readme to include automake for building
#599
nvvishanthi
closed
3 years ago
3
[cudapoa] Update cudapoa to use DeviceAllocator
#598
atadkase
closed
3 years ago
2
WIP: [cudapoa] Add default device allocator
#597
atadkase
closed
3 years ago
0
[cudaaligner]: Fix cmake for cudaaligner optimization flag
#596
nvvishanthi
closed
3 years ago
1
[cudamapper] add important gcc flags
#595
tijyojwad
closed
3 years ago
1
[samples] fix sample compilation for gcc9
#594
tijyojwad
closed
3 years ago
2
How to install GenomeWorks on local machine?
#593
kountaydwivedi
opened
3 years ago
10
[logging] fix spdlog incompatibility with gcc9
#592
tijyojwad
closed
3 years ago
3
[cudamapper] bug in extracting kmers
#591
r-mafi
closed
3 years ago
0
[cudamapper] Add anchor chain output functions to chainer_utils.cuh.
#590
edawson
opened
3 years ago
2
[cudaextender] Add and update READMEs
#589
atadkase
closed
3 years ago
0
[pygw] add alignment visualizer tool
#588
tijyojwad
closed
3 years ago
4
[cudapoa] overlapping vertical/diagonal update of score matrix with horizontal update
#587
r-mafi
opened
3 years ago
0
[docs] rework documentation for modules in GW
#586
tijyojwad
closed
3 years ago
0
[cmake] push fixes for cmake
#585
tijyojwad
closed
3 years ago
0
[cudapoa] add tests for different band modes
#584
r-mafi
closed
3 years ago
0
[Documentation] Add code blocks instructions for dependencies setup
#583
ohadmo
opened
3 years ago
0
[cudaextender] Update readme with cudaextender info
#582
atadkase
closed
3 years ago
0
[cudapoa] Unify NW kernels
#581
r-mafi
closed
3 years ago
4
[cudaextender] Performance analysis
#580
atadkase
opened
3 years ago
0
[cudaextender] Kernel optimizations
#579
atadkase
opened
3 years ago
0
[cudaextender] Make output compression async
#578
atadkase
opened
3 years ago
0
[cudaextender] Explore configurability of kernel launch parameters.
#577
atadkase
opened
3 years ago
0
[cudaextender] Calculate memory limits based on datastructures used.
#576
atadkase
opened
3 years ago
0
[cudaextender] Check if entropy calculation can be done using a float.
#575
atadkase
opened
3 years ago
0
[cudaextender] Replace cudaextender's hardcoded encoding scheme with cudasequence
#574
atadkase
opened
3 years ago
0
[cudapoa] Traceback Buffer
#573
r-mafi
closed
3 years ago
0
[cmake] move version file configuration into base
#572
tijyojwad
opened
3 years ago
0
[pygenomeworks] evaluate_paf script is too slow to be practical for very large PAF files
#571
edawson
opened
3 years ago
0
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