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NVIDIA-Genomics-Research
/
GenomeWorks
SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
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#include "seqio.h" //TODO add this to 3rdparty
#670
CTForGitHub
opened
2 months ago
0
Bump tqdm from 4.31.1 to 4.66.3 in /pygenomeworks
#669
dependabot[bot]
opened
4 months ago
0
GenomeWorks fails to compile with CUDA 12
#668
quim0
opened
1 year ago
1
Bump numpy from 1.16.3 to 1.22.0 in /pygenomeworks
#667
dependabot[bot]
opened
2 years ago
1
[cudapoa] Kernel error
#666
rvaser
opened
2 years ago
0
[cudamapper] compared to minimap2
#665
wzboy1984
opened
2 years ago
0
cudamapper terminates while doing an all-vs-all mapping
#664
alanorth
opened
2 years ago
0
Build fails with gcc 7 and 8
#663
tristanpwdennis
closed
2 years ago
1
Floating Point Exception in Racon
#662
schorlton
opened
3 years ago
0
Add missing <limits> for GCC 11
#661
pb-dseifert
closed
3 years ago
5
Buils fails with gcc 9.3
#660
dominik-handler
closed
3 years ago
4
[cudaaligner] Fixed bug in memory requirement estimation and misc improvements
#659
ahehn-nv
closed
3 years ago
0
[common] Added debug output to preallocated allocator
#658
ahehn-nv
closed
3 years ago
0
[cudaaligner] myers_gpu uses workspace per block now
#657
ahehn-nv
closed
3 years ago
0
cudamapper error using bam output
#656
RichardCorbett
opened
3 years ago
2
How to fix cudaErrorInvalidDeviceFunction exception for cudamapper
#655
wzboy1984
closed
3 years ago
1
[sdk] removed limits.cuh in favor of libcu++'s limits
#654
ahehn-nv
opened
3 years ago
0
[sdk] remove --expt-relaxed-constexpr flags
#653
ahehn-nv
closed
3 years ago
0
Update tqdm version
#652
ohadmo
closed
3 years ago
0
Fix calendar versioning
#651
ohadmo
closed
3 years ago
0
Update requirements for cupy and h5py
#650
ohadmo
closed
3 years ago
0
Update requirements
#649
EpiSlim
closed
3 years ago
0
[pygenomeworks] logger chatter.
#648
iiSeymour
opened
3 years ago
2
[pygenomeworks] pinned dependencies.
#647
iiSeymour
closed
3 years ago
1
[cudaaligner] Fix: set correct device in create_aligner
#646
ahehn-nv
closed
3 years ago
0
[cudaaligner] banded Myers: allow individual bandwidth
#645
ahehn-nv
closed
3 years ago
0
Specified branch for libcudacxx in .gitmodules
#644
EpiSlim
closed
3 years ago
0
[cudaaligner] Banded Myers: moved Alignment object creation to sync_a…
#643
ahehn-nv
closed
3 years ago
0
[cudaaligner] add device results interface
#642
ahehn-nv
closed
3 years ago
0
[cudaaligner] Use RLE for alignment
#641
ahehn-nv
closed
3 years ago
1
[sdk][cudaaligner] Misc. improvements
#640
ahehn-nv
closed
3 years ago
0
[DO NOT MERGE] Testing CI [skip ci]
#639
raydouglass
closed
3 years ago
2
Ahehn/warning fixes
#638
ahehn-nv
closed
3 years ago
2
format.h is broken and breaks CUDA compile
#637
cement-head
opened
3 years ago
3
[cudamapper] Ignore -Wunused-parameter for Thrust
#636
mimaric
closed
3 years ago
2
[Release v2021.02.0] Merge release v2021.02.0 branch into Master
#635
ohadmo
closed
3 years ago
0
@GW_USE_DEVICE_ALLOCATOR_FILE@
#634
pb-cdunn
opened
3 years ago
3
Promote dev version to 2021.06.0
#633
ohadmo
opened
3 years ago
0
[cudaaligner] Corrected the memory requirements of Hirschberg-Myers
#632
ahehn-nv
closed
3 years ago
0
[cudaaligner] Fixed bug in reset_max_bandwidth()
#631
ahehn-nv
closed
3 years ago
1
[cudaaligner] Disabled caching device-allocator may trigger OOM in cudaaligner
#630
ahehn-nv
opened
3 years ago
0
[cudaaligner] Introduce FixedBandAligner interface
#629
ahehn-nv
closed
3 years ago
0
[cudaaligner] Add aligner.reset_bandwidth(int32_t) to banded Myers aligner
#628
ahehn-nv
closed
3 years ago
4
Support calendar versioning
#627
ohadmo
closed
3 years ago
1
[cudaaaligner] Improved task scheduling for Banded Myers
#626
ahehn-nv
closed
3 years ago
3
Creating separate files for testing data in cudaaligner (issue #505)
#625
EpiSlim
opened
3 years ago
0
[cudaaligner] Remove limitation of launching max 65535 alignments at once.
#624
ahehn-nv
closed
3 years ago
0
[cudaaligner] fixed a warning about double->float conversion
#623
ahehn-nv
closed
3 years ago
0
Add missing error checks to avoid silent errors
#622
ahehn-nv
closed
3 years ago
1
replaced cudaMemcpy with device_copy_n in cudaaligner
#621
EpiSlim
closed
3 years ago
1
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