YeoLab gscripts issues - Githubissues

YeoLab / gscripts

General Use Scripts and Helper functions

MIT License

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Use of uninitialized value in division (/) at overlap_peakfi_with_bam_PE.pl line 67.

#98 ELMMA-FUNNY closed 1 year ago
0
Use of uninitialized value in division (/) at overlap_peakfi_with_bam_PE.pl line 67.

#97 ELMMA-FUNNY opened 1 year ago
1
NO error with NO results

#96 ELMMA-FUNNY opened 1 year ago
4
Running "Peak_input_normalization_wrapper.pl" takes a long time

#95 amdreamer opened 3 years ago
1
Error when running make_bigwig_files.py

#94 broochpawN opened 4 years ago
0
Demultiplexing Issue - X1A / X1B Adapters

#93 BuddahKat opened 5 years ago
0
segfault in barcode_collapse_pe.py when output dir doesn't exist

#92 JCSzamosi opened 7 years ago
2
Emily working

#91 ecwheele closed 7 years ago
0
fixed demux_paired_end.py to eliminate reads that are shorter than th…

#90 ecwheele closed 7 years ago
0
Don't do oldsplice or miso

#89 olgabot opened 7 years ago
0
streamline mirli to not hold up the pipeline

#88 broughtonjp opened 8 years ago
0
Error running RNA-Seq pipeline on single-end data

#87 shassathe opened 8 years ago
0
Errors in running analyze_miRli.scala

#86 broughtonjp closed 8 years ago
1
Changing genome in analyze_miRli.scala

#85 broughtonjp opened 8 years ago
3
Error in analyze_rna_seq.scala after updates

#84 ecwheele closed 8 years ago
1
Error in analyze_rna_seq.scala after updates

#83 ecwheele closed 7 years ago
0
Sailfish quant failing in pipeline

#82 gpratt opened 8 years ago
2
analyze_clip_seq.scala error

#81 broughtonjp closed 8 years ago
6
error with submit_miso_pipeline.py

#80 ecwheele closed 7 years ago
1
RnaSeq Pipeline Fails before compiling jobs

#79 shassathe closed 8 years ago
2
where is featureCounts?

#78 ecwheele closed 8 years ago
1
analyze_rna_seq.scala won't work

#77 ecwheele closed 8 years ago
15
analyze_rna_seq.scala breaks at `samtools index`

#76 olgabot opened 9 years ago
0
analyze_rna_seq.scala not able to complie QScript

#75 shassathe closed 8 years ago
0
Type mismatch in analyze_rna_seq.scala

#74 olgabot closed 8 years ago
6
analyze_rna_seq.scala fails while compiling script

#73 shassathe closed 9 years ago
5
RNAseq pipeline errors out with Java runtime environment error

#72 hjeanc closed 9 years ago
6
oldsplice.py paths

#71 mlovci closed 9 years ago
4
not found: type MapRepetitiveRegions

#70 hjeanc closed 9 years ago
6
Error Running make_trackhubs.py

#69 shassathe closed 9 years ago
6
refining fastq quality processing

#68 broughtonjp closed 9 years ago
0
Adding parsing of fastq quality before splitting miRs

#67 broughtonjp closed 9 years ago
0
Rna-Seq pipeline breaks while indexing bam file

#66 shassathe closed 9 years ago
3
fixed depreciated bedtools merge commands

#65 broughtonjp closed 9 years ago
1
update miRli analysis for bedtools

#64 broughtonjp closed 9 years ago
9
Errors Running RNA-Seq pipeline for paired end samples

#63 shassathe closed 9 years ago
2
Error during gscripts install

#62 shassathe closed 9 years ago
1
Update bowtie2 indexes

#61 olgabot closed 9 years ago
0
rna-seq pipeline fails for paired end (salifish)

#60 shassathe closed 9 years ago
1
analyze_rna_seq.scala paired end segfault at STAR and sailfish walltime ends

#59 olgabot closed 9 years ago
6
remove reptitive regions on paired-end

#58 olgabot closed 9 years ago
6
Why no repetitive region removal on paired end reads?

#57 olgabot closed 9 years ago
2
Add a #!/usr/bin/env python line at the top to specifically call python

#56 olgabot closed 9 years ago
1
Branch on sailfish running on paired end reads

#55 olgabot closed 9 years ago
4
Sailfish error: gzip broken pipe

#54 olgabot closed 9 years ago
3
Error in cutadapt.py: "No such file or directory"

#53 olgabot closed 9 years ago
1
Update TSCC bashrc to latest Anaconda distribution

#52 olgabot closed 9 years ago
1
rna_seq_scala ERROR at bigBED

#51 LeenMachine closed 9 years ago
2
rna_seq_scala fail at rna_editing using hg19

#50 LeenMachine closed 9 years ago
1
Suggestion: Please add featureCounts to rna_seq_scala script

#49 LeenMachine opened 9 years ago
1