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abims-sbr
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adaptsearch
A pipeline for the search of adaptive mutations and positively selected genes from RNASeq orthologs
http://www.sb-roscoff.fr/fr/equipe-adaptation-et-biologie-des-invertebres-en-conditions-extremes
GNU General Public License v3.0
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Update 05_CDS_search scripts
#54
cberthelier
closed
2 years ago
1
Update S01_find_orf_on_multiple_alignment.py for checking the reading…
#53
cberthelier
closed
2 years ago
1
CI : enable github action
#52
lecorguille
opened
3 years ago
0
Fix cdssearch
#51
lecorguille
opened
3 years ago
0
Naming issue in CDS Search
#50
lecorguille
opened
3 years ago
0
MutCount and multi line fasta
#49
lecorguille
opened
4 years ago
0
Problem with planemo test
#48
Mataivic
closed
4 years ago
1
Update README.md
#47
lecorguille
opened
4 years ago
0
Bug reporting Orthogroup tool
#46
casteljade
opened
4 years ago
7
Misc improvments
#45
Mataivic
closed
5 years ago
0
Add ecological apriori
#44
Mataivic
closed
5 years ago
7
Pairwise with diamond
#43
Mataivic
closed
6 years ago
0
Use list file (mais mieux)
#42
Mataivic
closed
6 years ago
0
Use list file
#41
Mataivic
closed
6 years ago
1
Change names strategy
#40
Mataivic
closed
6 years ago
0
Better filereading
#39
Mataivic
closed
6 years ago
0
Mutcount rewriting
#38
Mataivic
closed
6 years ago
0
modified blastalign to return only one output
#37
Mataivic
closed
6 years ago
0
Miscellaenous
#36
Mataivic
closed
6 years ago
0
Correc bug blastalign norenaming
#35
Mataivic
closed
6 years ago
0
Factorisation filter assemblies
#34
Mataivic
closed
6 years ago
0
updated helps
#33
Mataivic
closed
6 years ago
0
Nouvelle version POGs (POO)
#32
Mataivic
closed
6 years ago
0
Correc mutcount
#31
Mataivic
closed
6 years ago
2
Update orthogroups tool
#30
Mataivic
closed
6 years ago
1
Try_dev/null_and_travis_wait
#29
Mataivic
closed
6 years ago
1
OrthoFinder failed (GalaxyDev)
#28
Mataivic
closed
6 years ago
1
Functions factoring
#27
Mataivic
closed
6 years ago
0
Use argparse in orthgroup_tool
#26
lecorguille
closed
6 years ago
1
Add orthogroups tool
#25
Mataivic
closed
6 years ago
0
Correction bug pairwise
#24
Mataivic
closed
6 years ago
0
Bug reporting BlastAlign
#23
Mataivic
opened
6 years ago
1
New failed tests with Filter Assemblies (while debugging Pairwise and BlastAlign)
#22
Mataivic
closed
6 years ago
1
Fix bug concat phyl
#21
Mataivic
closed
6 years ago
0
Mutcount no zip
#20
Mataivic
closed
6 years ago
0
Update pogs paralogs
#19
Mataivic
closed
7 years ago
0
MutCount -> separated: need functional tests
#18
lecorguille
closed
7 years ago
1
Pairwise
#17
lecorguille
closed
7 years ago
0
No more zip
#16
lecorguille
closed
7 years ago
2
Filter assemblies
#15
lecorguille
closed
7 years ago
0
Mut count testtoolshed
#14
Mataivic
closed
7 years ago
0
Add mut count
#13
Mataivic
closed
7 years ago
0
Add mut count
#12
Mataivic
closed
7 years ago
1
Review the toolshed repository description
#11
lecorguille
opened
7 years ago
0
Test tool shed
#10
Mataivic
closed
7 years ago
1
Rename scripts
#9
lecorguille
closed
7 years ago
1
version 1.1 - Functional Tests
#8
Mataivic
closed
7 years ago
0
Dev
#7
Mataivic
closed
7 years ago
0
Update late december (progression in wrappers and functional tests)
#6
Mataivic
closed
7 years ago
0
Add : datatests + updated wrappers (but not completed yet)
#5
Mataivic
closed
7 years ago
0
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