issues
search
bartongroup
/
RATS
Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
MIT License
32
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
The other half of the picture is not shown
#72
Tang-pro
opened
3 months ago
14
Need to Use Rep() in call_dtu
#71
Tenayav
closed
1 year ago
13
0.6.7
#70
fruce-ki
closed
2 years ago
0
Issue with importing salmon files
#69
Mekilich
closed
2 years ago
16
Development
#68
fruce-ki
closed
2 years ago
0
Error parsing kallisto abundance.h5 files
#67
Angad-33
closed
2 years ago
8
Mean instead of sum
#66
fruce-ki
closed
5 years ago
0
transcript ID cross-check
#65
fruce-ki
closed
5 years ago
1
All transcripts/genes ineligible?
#64
brettvanderwerff
closed
5 years ago
7
Trim the size of the docs
#63
fruce-ki
closed
5 years ago
1
ggplot2 not being loaded for the tests
#62
fruce-ki
closed
5 years ago
0
Bioconductor
#61
fruce-ki
opened
5 years ago
2
Tidy up code
#60
fruce-ki
closed
5 years ago
1
Error in if (threads > parallel::detectCores(logical = TRUE)) return(list(error = TRUE, : missing value where TRUE/FALSE needed
#59
brettvanderwerff
closed
5 years ago
7
Improve memory footprint
#58
fruce-ki
closed
5 years ago
1
Merge dev into master as 0.6.4
#57
fruce-ki
closed
6 years ago
0
problem parsing kallisto abundance.h5
#56
fruce-ki
closed
6 years ago
4
fish4rodents() input problem with data.table 1.11.0
#55
fifdick
closed
6 years ago
10
optional dependencies not optional
#54
fruce-ki
closed
6 years ago
2
0.6.3
#53
fruce-ki
closed
6 years ago
0
Detecting annotation discrepancies
#52
fruce-ki
closed
6 years ago
1
Determining eligibility based on number of expressed isoforms
#51
fruce-ki
closed
6 years ago
0
More sensitive default settings?
#50
fruce-ki
closed
5 years ago
1
plot_gene() error
#49
bmumbler
closed
6 years ago
7
Differentiate DTU from DGE?
#48
fruce-ki
closed
6 years ago
0
Critical bugfix
#47
fruce-ki
closed
6 years ago
0
rrep_dtu_freq
#46
fruce-ki
closed
6 years ago
2
0.6.1
#45
fruce-ki
closed
6 years ago
0
Plot gene models
#44
fruce-ki
closed
5 years ago
2
GeneRanges/TXDB formats for annotation?
#43
fruce-ki
closed
5 years ago
3
(dev. ver.) Why did a crash condition pass the tests?
#42
fruce-ki
closed
6 years ago
0
Add option to set a seed for the random engine
#41
fruce-ki
closed
6 years ago
0
RATS analysis fails with Ensembl annotations
#40
Klim314
closed
6 years ago
4
Make scaling accept a vector, not just a scalar
#39
fruce-ki
closed
6 years ago
0
Genes in annotation not recorded in $Parameters
#38
fruce-ki
closed
6 years ago
3
0 Reported DTU genes
#37
Klim314
closed
6 years ago
14
N/A DTU inflating TRUE DTU
#36
fruce-ki
closed
6 years ago
1
RATs crashes if no genes are eligible for testing
#35
fruce-ki
closed
6 years ago
0
Empty isoform switching reports are not empty
#34
fruce-ki
closed
6 years ago
1
Sleuth input structure changed.
#33
fruce-ki
closed
6 years ago
4
v0.5.0
#32
fruce-ki
closed
7 years ago
0
shiny plot
#31
fruce-ki
closed
7 years ago
0
Change summary display format
#30
fruce-ki
closed
7 years ago
0
take annotation straight from the sleuth object
#29
fruce-ki
closed
7 years ago
0
Only running DTU test?
#28
jamespblloyd
closed
7 years ago
2
Replicate lines in plot_gene mask one another
#27
fruce-ki
closed
7 years ago
0
Bypass sleuth loader
#26
fruce-ki
closed
7 years ago
2
annotation parameter to denest_sleuth_boots
#25
fruce-ki
closed
7 years ago
0
Small change in proportion but still significant?
#24
jamespblloyd
closed
7 years ago
13
Directly import transcript abundances from salmon/kallisto output
#23
jamespblloyd
closed
7 years ago
5
Next