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biocore
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metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
MIT License
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Give AmpliconSampleSheet a SheetType.
#164
charles-cowart
closed
6 months ago
0
Tellseq syndna notebook
#163
AmandaBirmingham
closed
6 months ago
0
Added support for abs-quant in seqpro
#162
charles-cowart
closed
6 months ago
1
Updates to Dev branch
#161
charles-cowart
closed
6 months ago
5
Dev
#160
charles-cowart
closed
6 months ago
4
Teeny fix to incorrect comment
#159
AmandaBirmingham
closed
6 months ago
0
Incorporating new samplesheet generation scheme into wetlab notebooks.
#158
RodolfoSalido
closed
6 months ago
5
refactored code into class objects
#157
charles-cowart
closed
7 months ago
4
Linter fixes for absolute quant code that was merged
#156
AmandaBirmingham
closed
7 months ago
0
Port Mackenzie's NPH_calc_df_SLURRY.ipynb functionality into modules and unit-test
#155
AmandaBirmingham
closed
7 months ago
4
Unique qiita id fix
#154
charles-cowart
opened
7 months ago
0
synced plate_replication, absolute_quant, and matrix_tube development. Added unit test for matrix_tube_pipeline
#153
RodolfoSalido
closed
7 months ago
14
Add tests dp
#152
dpear
closed
8 months ago
7
Fixes bug in make_sample_sheet()
#151
charles-cowart
closed
8 months ago
6
make_sample_sheet() function doesn’t accept 'contains_replicates' flag in Bioinformatics dictionary.
#150
RodolfoSalido
closed
8 months ago
1
Change pre-prep file column names
#149
charles-cowart
closed
8 months ago
2
update sequencers i5 reversecomp details in samplesheet generation info in notebooks.
#148
RodolfoSalido
closed
6 months ago
1
Fixes #125
#147
charles-cowart
closed
8 months ago
2
minor updates
#146
charles-cowart
closed
10 months ago
3
synDNA notebook update
#145
RodolfoSalido
closed
10 months ago
6
adding support for syndna_pool_number
#144
charles-cowart
closed
10 months ago
1
fixes most bugs
#143
charles-cowart
closed
7 months ago
4
Dev
#142
charles-cowart
closed
10 months ago
0
Dev
#141
charles-cowart
closed
10 months ago
0
Updated text
#140
charles-cowart
closed
10 months ago
3
Fixes 122 v2
#139
charles-cowart
closed
11 months ago
1
Fixes 122
#138
charles-cowart
closed
11 months ago
1
Fixes #120
#137
charles-cowart
closed
11 months ago
2
Fixes #119
#136
charles-cowart
closed
11 months ago
1
Fixes #111
#135
charles-cowart
closed
11 months ago
0
Replicate updates
#134
charles-cowart
closed
11 months ago
1
Added support for replicates
#133
charles-cowart
closed
11 months ago
3
Add support for replicates
#132
charles-cowart
closed
11 months ago
3
fixes #130
#131
charles-cowart
closed
11 months ago
2
metagenomics_pooling_notebook: Assay type needs to be changed to 'Metagenomic' replacing 'Metagenomics' in Sample Sheet Generation
#130
caiemmtri
closed
11 months ago
1
Updates based on testing
#129
charles-cowart
closed
1 year ago
2
Refactored Plate Replication functionality added to Metapool
#128
charles-cowart
closed
1 year ago
5
improve README
#127
antgonza
closed
1 year ago
0
Pinned pandas
#126
charles-cowart
closed
1 year ago
1
amplicon notebook: error should be raised when plate map and notebook project names do not match
#125
mmbryant23
closed
8 months ago
1
Fix raw_reads count extraction.
#124
charles-cowart
closed
1 year ago
2
Updated echo plate profiles, calculate_iseqnorm_pooling_volumes(), and well_id_96
#123
RodolfoSalido
closed
1 year ago
2
need well_id_96 information added to metagenomics samplesheets
#122
mmbryant23
closed
4 months ago
7
User-defined well_description now working correctly.
#121
charles-cowart
closed
1 year ago
1
metagenomics_pooling_notebook: Well_description in novaseq samplesheet should have the same format as well_description in the amplicon pre-preparation file
#120
mmbryant23
closed
11 months ago
2
amplicon pre-preparation file generator notebook: generate warning if invalid characters found in sample_name
#119
mmbryant23
closed
11 months ago
5
Test how calculate_iseqnorm_pooling_volumes() handles NaN
#118
charles-cowart
closed
1 year ago
2
nans break calculate_iseqnorm_pooling_volumes()
#117
RodolfoSalido
closed
1 year ago
4
column names in [Data] now supports alternatives.
#116
charles-cowart
closed
1 year ago
3
Added well_id_96 and tm10_8_tool as required columns
#115
charles-cowart
closed
1 year ago
12
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