cschin Peregrine issues

cschin / Peregrine

Peregrine: Fast Genome Assembler Using SHIMMER Index

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Singularity containers for Peregerine

#42 gitcruz closed 3 years ago
1
how to produced p_ctg_cns.fa by p_ctg.fa?

#41 Ahahaha3 closed 3 years ago
1
Docker container's cwd is not root, slight issue with mounting

#40 Raesearch closed 3 years ago
1
Submit a job with peregrine

#39 RenzoTale88 opened 3 years ago
1
assembly contiguity not good - coverage parameter?

#38 mgraeff closed 3 years ago
2
Run peregrine with singularity

#37 RenzoTale88 opened 4 years ago
1
slow: containerized Peregrine on gpfs file system

#36 ptrebert opened 4 years ago
1
What's `pypeflow.simple_pwatcher_bridge:(slept for another 1100.0s -- another 110 loop iterations)`

#35 SHuang-Broad closed 4 years ago
1
How can I install Peregrine python packages?

#34 fmalmeida closed 2 years ago
6
Exception: Some tasks are recently_done but not satisfied

#33 chhylp123 opened 4 years ago
6
Upsteam kseq

#32 Phhere opened 4 years ago
1
Peregrine wihout Docker?

#31 Tdanis opened 4 years ago
9
Readme fixes

#30 sebhtml closed 4 years ago
0
core file produced but final output is created

#29 aclum opened 4 years ago
1
reformat c code

#28 cschin closed 4 years ago
0
Support generating alt contigs and their concensus

#27 cschin closed 4 years ago
0
python2.7: command not found

#26 zhenzhenyang-psu opened 4 years ago
2
make all error

#25 zhenzhenyang-psu closed 4 years ago
1
Racon and Pilon

#24 mictadlo opened 4 years ago
1
pypeflow Error Unable to run the assembly

#23 sum732 opened 4 years ago
1
Peregrine not recognising options

#22 ghost opened 4 years ago
7
Accuracy column in preads.ovl

#21 mrvollger closed 4 years ago
4
error in 3-asm

#20 zhenzhenyang-psu opened 5 years ago
2
Networkx < 2.4

#19 mrvollger opened 5 years ago
0
crash in 3-asm: ovlp_to_graph.py

#18 rfinkers closed 5 years ago
1
Question on SHIMMER and MC

#17 kfletcher88 opened 5 years ago
1
crash in 2-ovlp

#16 macmanes opened 5 years ago
4
shmr_map issue

#15 smoretti opened 5 years ago
4
incorrect arrays allocated leading to null pointer

#14 skoren closed 5 years ago
1
Question about best practices

#13 cschin opened 5 years ago
1
error in building docker image

#12 githubrookie1 opened 5 years ago
1
Human genome assembly parameters

#11 kautto opened 5 years ago
5
Pypeflow issues

#10 kautto closed 5 years ago
4
Add script to identify un-assembled reads

#9 cschin opened 5 years ago
0
Add a clean up script

#8 cschin opened 5 years ago
0
using s3 object instead of the dropbox one for long term support

#7 cschin closed 5 years ago
0
provide a default testing case to run the docker image for a small E.…

#6 cschin closed 5 years ago
2
Add peregrine 'hello world' runbook

#5 a-khalak opened 5 years ago
6
Parameters for plant genome

#4 mycecilia closed 5 years ago
8
docker errors

#3 bitcometz closed 5 years ago
4
Null pointer error during installation

#2 alima90 closed 5 years ago
5
Fix missing ! in syntax

#1 skoren closed 5 years ago
0