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dnanexus-rnd
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GLnexus
Scalable gVCF merging and joint variant calling for population sequencing projects
Apache License 2.0
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Inquiry Regarding IOError Encountered During Multiple Rounds of Merging gVCF Files Using GLnexus
#313
zhanxiangzong
opened
1 month ago
1
Merging vcf files error with glnexus:v1.2.7
#312
poddarharsh15
opened
3 months ago
0
RNC is ".." on site with DP=1, but it's "D." on site with DP=2
#311
esctrionsit
opened
4 months ago
0
Updating the required depth to 2 in config.
#310
kishwarshafin
opened
5 months ago
0
bad_alloc
#309
bbimber
opened
5 months ago
6
Optimizing memory usage
#308
georgiiprovisor
opened
5 months ago
0
Update OS version to supported release
#307
thebigcorporation
opened
6 months ago
0
RNC field not comma-separated
#306
holtgrewe
opened
6 months ago
0
std::logic_error when running Basic Command
#305
cantlap
opened
6 months ago
1
Failed Install when using Non-Docker file Install
#304
cantlap
opened
6 months ago
0
malformed merged gVCF from DV config
#303
Overcraft90
closed
7 months ago
1
IOError: RocksDB kIOError
#302
fsw10
opened
8 months ago
0
Failed to open exemplar gVCF file
#301
nat6an
closed
6 months ago
3
Genotyping specific sites from GVCF
#300
bwubb
opened
9 months ago
0
Invalid: allele is not a DNA sequence
#299
bartcharbon
opened
9 months ago
0
GLnexus , error while combining gvcf files
#298
DineshRavindraRaju
opened
9 months ago
3
GVCFs : std::bad_alloc
#297
DineshRavindraRaju
closed
9 months ago
0
Merging GVCF or VCF?
#296
alanlamsiu
opened
9 months ago
0
./runglnexus.sh: line 2: 20506 Terminated
#295
gotouerina
opened
10 months ago
0
glnexus_cli with Singularity - GLnexus.DB "directory already exists"
#294
ama249
closed
8 months ago
2
deepvarinat
#293
Tonitsk8264
opened
11 months ago
0
Merging and variant loss
#292
Fred-07
opened
11 months ago
0
X and Y-chromosome calling
#291
shaze
opened
1 year ago
0
Is capnp-test failure a cause of worry?
#290
Axze-rgb
opened
1 year ago
0
The configuration presents for DeepVariant whole genome sequencing
#289
xunzhizhang
opened
1 year ago
1
Exception deserializing BCF bucket
#288
lvclark
opened
1 year ago
0
error
#287
shinlin77
opened
1 year ago
3
(DP) Depth value being incorrectly set to 0 for calls
#286
carsonhh
opened
1 year ago
2
More details needed on configuration options for custom config
#285
jcm6t
opened
1 year ago
0
N+1 calling code
#284
Yask-Gupta
opened
1 year ago
0
Please provide instructions on how to use singularity to run GLnexus
#283
hoyonh
opened
1 year ago
1
No filter info after merging deepvariant gvcfs.
#282
JieHe233
opened
1 year ago
0
glibc error when using conda version
#281
xiekunwhy
opened
1 year ago
0
N+1 calling as way to enhance small dataset accuracy
#280
JosephLalli
opened
1 year ago
0
BED file not taken into account
#279
ThatMatin
opened
2 years ago
6
Resume GLNexus for an existing GLnexus.DB database
#278
zhoudreames
closed
1 year ago
0
out of memory in genotyping stage
#277
Archieyoung
opened
2 years ago
0
Glnexus failed to joint the g.vcf file generated from GATK Haplotypecaller with BP_resolution
#276
Drdreammaerd
opened
2 years ago
0
GLnexus CLI generates VCFs missing GATK-compatible INFO fields
#275
bh007
opened
2 years ago
2
Long reads sequencing data
#274
LiShuhang-gif
opened
2 years ago
0
can't compile GLnexus on RHEL 7.9 (LZ4 errors)
#273
ponomarevsy
opened
2 years ago
1
Invalid: BCFKeyValueData::import_gvcf:invalid data set name
#272
aguygarner
opened
2 years ago
0
adding glnexus to bioconda
#271
ramprasadn
opened
3 years ago
5
Any configuration preset for paftools caller?
#270
elcortegano
opened
3 years ago
0
Failed to genotype: Invalid: genotyper
#269
meghatron21
opened
3 years ago
4
Test failures on ARM
#268
jdidion
opened
3 years ago
0
Build on CentOS7
#267
james-vincent
opened
3 years ago
7
problems merging variants with DeepVariant_WES
#266
tbrunetti
closed
3 years ago
1
Incorrect variant calls
#265
gevro
closed
3 years ago
1
cannot join g.vcf files using glnexus
#264
kostasgalexiou
closed
3 years ago
12
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