elizabethmcd metabolisHMM issues

elizabethmcd / metabolisHMM

Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs

GNU General Public License v3.0

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issues

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Updated python issues

#60 susheelbhanu closed 3 months ago
1
single-marker-phylogeny > view on the tree

#59 elizabethmcd opened 2 years ago
0
Check for - in genome names

#58 elizabethmcd opened 2 years ago
0
Error running summarize-metabolism

#57 bbaker567 closed 2 years ago
2
SciPy Package Dependencies and Updates

#56 elizabethmcd opened 2 years ago
0
markers and phylogeny

#55 elizabethmcd opened 2 years ago
1
Retrieving protein-coding sequence from a giving function

#54 Streptomyces1 opened 3 years ago
1
Hmmsearch crashes at search-custom-markers

#53 nikobiota closed 3 years ago
3
Fasta formating

#52 Streptomyces1 closed 4 years ago
3
Demo dataset

#51 elizabethmcd closed 4 years ago
1
TOL DB

#50 elizabethmcd closed 4 years ago
1
genome names cannot contain dashes?

#49 taylorreiter closed 4 years ago
2
dev branch

#48 elizabethmcd opened 4 years ago
1
Include missing files in sdist

#47 thatch opened 4 years ago
0
Missing files in sdist

#46 thatch closed 4 years ago
3
Create a conda release

#45 vinisalazar opened 4 years ago
12
make-heatmap.R script location?

#44 Binvir closed 4 years ago
3
fixes

#43 elizabethmcd closed 4 years ago
0
Kofam search yields TC bit threshhold error

#42 morgvevans closed 4 years ago
2
The directory of curated metabolic markers could not be found.

#41 sarah872 opened 4 years ago
22
no hmmersearch for summarize-metabolism

#40 Thexiyang closed 4 years ago
10
version numbers

#39 elizabethmcd closed 4 years ago
1
Documentations and figures

#38 elizabethmcd closed 4 years ago
1
Additions to create-genome-phylogeny

#37 elizabethmcd closed 4 years ago
2
prodigal quiet

#36 elizabethmcd closed 4 years ago
1
installation instructions

#35 elizabethmcd closed 4 years ago
1
R script options

#34 elizabethmcd closed 4 years ago
2
iTOL options

#33 elizabethmcd closed 4 years ago
0
single marker corresponding tree making

#32 elizabethmcd closed 5 years ago
1
heatmap row order

#31 elizabethmcd closed 5 years ago
0
programs installed

#30 elizabethmcd closed 5 years ago
0
plotting option

#29 elizabethmcd closed 5 years ago
0
iTol metadata files for phylogeny workflows

#28 elizabethmcd closed 5 years ago
0
check for markers download

#27 elizabethmcd closed 5 years ago
0
connect to kofamkoala

#26 elizabethmcd closed 5 years ago
3
output format

#25 elizabethmcd closed 5 years ago
0
Option for corresponding tree from single phylogeny

#24 elizabethmcd closed 5 years ago
0
Missing markers for summaries

#23 elizabethmcd closed 5 years ago
4
Reformatting fasta files

#22 elizabethmcd closed 5 years ago
0
Print genome if missing more than # of markers for phylogeny

#21 elizabethmcd closed 5 years ago
0
Metabolic Summary heatmap

#20 elizabethmcd closed 5 years ago
3
Major Release Tasks

#19 elizabethmcd closed 5 years ago
0
Documentation

#18 elizabethmcd closed 5 years ago
0
Any Pathway > Visualization

#17 elizabethmcd closed 5 years ago
0
Metabolic Summary > Visualization

#16 elizabethmcd closed 5 years ago
0
Concatenate script

#15 elizabethmcd closed 5 years ago
1
refseq hits

#14 elizabethmcd closed 5 years ago
1
tfdA test case

#13 elizabethmcd closed 5 years ago
1
Presence/absence among a given set of genomes

#12 elizabethmcd closed 5 years ago
2
Directory names

#11 elizabethmcd closed 5 years ago
2