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fmi-basel
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gliberal-scMultipleX
Feature extraction and linking of multiplexing data.
BSD 3-Clause "New" or "Revised" License
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3D Feature Extraction debugging
#122
nrepina
opened
2 days ago
4
Update scmultiplex README
#121
jluethi
opened
5 days ago
0
Update Segment by Intensity Threshold task
#120
nrepina
closed
5 days ago
0
Bug fix in select largest component function.
#119
nrepina
closed
5 days ago
0
Segment by Intensity Threshold Fractal Task
#118
nrepina
closed
5 days ago
0
Update fractal tasks core dep, pre-commit cleanup & manifest update
#117
jluethi
closed
1 week ago
0
Generalize surface mesh task
#116
nrepina
closed
2 weeks ago
0
Update fractal tasks core dep, pre-commit cleanup & manifest update
#115
jluethi
closed
1 week ago
2
Mesh computation, shape measurement, and spherical harmonic decomposition
#114
nrepina
closed
1 month ago
0
Not depending on `fractal-tasks-core[fractal-tasks]` may introduce import errors
#113
tcompa
closed
1 week ago
2
Bug fix in PlatyMatch task
#112
nrepina
closed
1 month ago
0
PlatyMatch ROI table sorting fix
#111
nrepina
closed
1 month ago
0
Update integration test with v0.6.1 changes.
#110
nrepina
closed
1 month ago
0
Remove Prefect requirement from general install.
#109
nrepina
closed
1 month ago
0
Update Fractal Manifest
#108
nrepina
closed
1 month ago
0
Minor update to scmpx Fractal tasks
#107
nrepina
closed
1 month ago
0
Cannot install with pip 24.1
#106
tcompa
closed
1 month ago
3
Update scMultiplex tasks to Fractal 2.0.
#105
nrepina
closed
2 months ago
0
Handle np.float deprecation
#104
jluethi
closed
1 week ago
2
Surface mesh Fractal task
#103
nrepina
closed
3 months ago
1
Switch from test data in repo to fetching test data from zenodo
#102
jluethi
closed
7 months ago
1
Test measurements for tiny objects
#101
jluethi
opened
7 months ago
1
Bug in plot_image_grid plotting function
#100
nrepina
opened
8 months ago
0
Add Fractal tasks for object and single-cell registration
#99
jluethi
closed
8 months ago
2
Update to fractal plotting
#98
nrepina
closed
9 months ago
0
Max wishlist
#97
nrepina
opened
9 months ago
0
Fractal 011 updates
#96
jluethi
closed
11 months ago
2
Save affine and ffd transformation to file
#95
enricotagliavini
closed
8 months ago
0
Update Task 3 to apply transformations to raw images and relabel RX segmentations
#94
nrepina
closed
9 months ago
0
Optional saving of relabelled and transformed images (task 3)
#93
nrepina
closed
8 months ago
0
Add choice of affine or affine+ffd to config file (task 3)
#92
nrepina
closed
8 months ago
0
Update scikit-image to 0.21.0 and add missing __init__.py
#91
enricotagliavini
closed
11 months ago
3
Add config parameters to accomodate user-specified folder naming
#90
nrepina
closed
11 months ago
0
Output euclidian distances before transformation in run_affine function
#89
nrepina
opened
11 months ago
0
Check PlatyMatch parallelization
#88
nrepina
closed
8 months ago
0
fix waitstatus_to_exitcode compatibility with python 3.9 and newer
#87
enricotagliavini
closed
11 months ago
0
Add fractal post-processing to scmpx
#86
enricotagliavini
closed
11 months ago
2
Add fractal post-processing to scmpx
#85
nrepina
closed
11 months ago
0
Improve logging when user makes input mistake in scmpx Fractal task
#84
nrepina
opened
1 year ago
4
update config file with generic paths
#83
enricotagliavini
closed
1 year ago
0
Fractal 1.3.0 alignment
#82
jluethi
closed
1 year ago
0
Add automated testing for Fractal measurements & masked measurements
#81
jluethi
closed
1 year ago
5
Support masked ROI loading in Fractal task
#80
jluethi
closed
1 year ago
0
Measurement bug in 3D Fractal measurements
#79
jluethi
closed
1 year ago
2
Skeleton features
#78
MauriceKahnwald
opened
1 year ago
0
Refactor of nuclear linking over multiplexing rounds
#77
nrepina
closed
1 year ago
1
Refactor nuclear linking code to share processing functions with Fractal
#76
nrepina
closed
1 year ago
0
Add PlatyMatch license file
#75
nrepina
closed
1 year ago
0
Updates platymatch to the latest version, plus minor refactor
#74
enricotagliavini
closed
1 year ago
0
Enhance nuclear linking exception handling
#73
enricotagliavini
opened
1 year ago
0
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