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hdng
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clonevol
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
GNU General Public License v3.0
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Example trees.tsv and variants.tsv files
#59
aklein-705
opened
1 year ago
0
driver annotations on fishplot
#58
mdiaz09
opened
1 year ago
0
error in convert.consensus.tree.clone.to.branch
#57
jsha129
opened
1 year ago
4
No consensus multi-sample models provided.
#56
pushpa-itagi
opened
2 years ago
0
Questions about data input
#55
xiw588
opened
2 years ago
0
could not find "'tree.tsv' and 'variants.tsv' these two files
#54
alextwc
opened
2 years ago
0
build_tree/infer.clonal.models unused argument error
#53
nfarnoud
opened
2 years ago
0
Error in merge.clone.trees
#52
kxxxjo
opened
2 years ago
2
infer.clonal.models() no rows to aggregate
#51
Aaron-sqw
opened
2 years ago
2
Data visualization when inferring a polyclonal model
#50
Psrwnsr
opened
3 years ago
0
cancer.initiation.model parameter in infer.clonal.models()
#49
LucasLiu20200131
opened
3 years ago
1
Error in Generating consensus clonal evolution trees across samples
#48
qindan2008
opened
3 years ago
1
PyClone-vi output
#47
DrBlanco-Heredia
opened
3 years ago
1
[Help..] Found 0 consensus model(s)
#46
biosurgeon
opened
3 years ago
2
variants from primary tumors and metastasis tumors without normal controls
#45
qindan2008
opened
3 years ago
0
to repeat the example in the ClonEvol Tutorial by RGui4.0.2
#44
nypeterju
opened
3 years ago
0
Update boxplot.r
#43
RupalHatkar
opened
4 years ago
0
estimate.clone.vaf
#42
DrBlanco-Heredia
opened
4 years ago
1
plot.all.trees.clone.as.branch -bug with branches name
#41
qingjian1991
opened
4 years ago
2
infer.clonal.models - bug with alternate cluster column names
#40
iryxie
opened
4 years ago
0
Can I still use clonevol on my data
#39
MaryGoAround
opened
4 years ago
4
Patients with only one sample
#38
logan-leak
opened
4 years ago
2
Issue infer.clonal.models function
#37
tomasellimichelle
closed
4 years ago
3
ERROR: No clonal models for sample, if founding.cluster = NULL
#36
SoloveyMaria
opened
4 years ago
1
combined p calculation number of rows do not agree
#35
teng-gao
opened
4 years ago
0
adding post.sample.col
#34
teng-gao
opened
4 years ago
0
Error in infer.clonal.models: No clonal models for sample
#33
hoonghim
opened
4 years ago
5
Error in plot.clonal.models
#32
fjgassner
opened
4 years ago
1
what if you do not have driver event and gene information?
#31
owyl2
opened
5 years ago
1
Interpretations of results from infer.clonal.model
#30
huiyao25
opened
5 years ago
0
error input from ClonEvol for fishplot
#29
Tinalxt
opened
5 years ago
1
question: specifying time-points & working with low VAFs
#28
paularstrpo
closed
5 years ago
6
question about enumerating clonal architectures
#27
sszhang72
closed
5 years ago
1
errors in plotting the tree (again...)
#26
jungminchoilab
closed
5 years ago
1
cluster.counts
#25
amanda-fitz
opened
5 years ago
4
Question about node label
#24
d88020
closed
5 years ago
1
How to use option ignore.clusters in infer.clonal.models
#23
xiongssg
closed
6 years ago
12
questions on the tree
#22
jial2
closed
6 years ago
3
Pyclone, cellular_prevalence, variant_allele_frequency
#21
zorrodong
closed
6 years ago
5
Input file from PhyloWGS
#20
mauroraptor86
closed
6 years ago
1
Error in infer.clonal.models function
#19
vale86ita
opened
6 years ago
4
Errors while plotting the tree
#18
jungminchoilab
closed
6 years ago
3
Error: 'createFishPlotObjects' is not an exported object from 'namespace:clonevol'
#17
crazyhottommy
closed
6 years ago
6
Monoclonal Fishplot Failure
#16
RaphaelHablesreiter
closed
4 years ago
4
CCF values in AML1 dataset
#15
andhena
closed
6 years ago
2
`show_guide` has been deprecated. Please use `show.legend` instead.
#14
DawnMKing
opened
6 years ago
2
ERROR: No clonal models for sample using clonevol
#13
gyfangel
closed
7 years ago
1
ERROR: No clonal models for sample
#12
gyfangel
closed
6 years ago
14
error while running infer.clonal.models()
#11
gunjangala
closed
7 years ago
3
tree plot error2
#10
xtmgah
closed
7 years ago
5
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