issues
search
kids-first
/
kf-rnaseq-workflow
:microscope: RNA-Seq workflow for Kids-First DRC
Apache License 2.0
9
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
🔖 bump release to 4.8.0
#57
dmiller15
closed
1 month ago
0
🛠️ RNASeQC Updates
#56
migbro
closed
3 months ago
0
Update Production WF Docker Tables
#55
github-actions[bot]
closed
3 months ago
0
🎉 add T1k HLA typer
#54
dmiller15
closed
3 months ago
0
Update Production WF Docker Tables
#53
github-actions[bot]
closed
3 months ago
0
🚀 STAR Diploid BETA WF
#52
migbro
closed
3 months ago
1
Update Production WF Docker Tables
#51
github-actions[bot]
closed
8 months ago
0
🤖 add docker table gha
#50
dmiller15
closed
7 months ago
0
🎨 simplify input variables
#49
dmiller15
closed
8 months ago
1
🤖 automate strand detection
#48
dmiller15
closed
1 year ago
1
🤖 Compute rMATs readlength inputs
#47
dmiller15
closed
1 year ago
0
Feature/mb mod rmats output
#46
zoomzoom1011
closed
1 year ago
1
🐛 Critical bug fix
#45
migbro
closed
1 year ago
0
Feature/mb upgrade annofuse
#44
migbro
closed
1 year ago
0
Update annofuse reference
#43
jharenza
opened
1 year ago
0
🏎 Updated reference for fusion annotator
#42
migbro
closed
1 year ago
1
⬆️ Upgrade dockerpulls for annoFuse
#41
migbro
closed
1 year ago
0
✏️ Edited doc for clarity
#40
migbro
closed
1 year ago
1
🔧 Change default fusion name column
#39
migbro
closed
1 year ago
0
✨ Added cram input support
#38
migbro
closed
2 years ago
0
🚸 Optional inputs for Cavatica Batch Tasks
#37
dmiller15
closed
2 years ago
0
🛠 Final Pre-release Tweaks
#36
migbro
closed
2 years ago
0
🦅 Release/mb 4.00 release prep
#35
migbro
closed
2 years ago
2
🎉 RNAseq Workflow V4 Pre-release party
#34
migbro
closed
2 years ago
1
💪 Upgrade gencode reference and add new SW Versions
#33
migbro
closed
2 years ago
0
🐛 star nameext failure
#32
dmiller15
closed
2 years ago
0
🎉 add rmats
#31
dmiller15
closed
2 years ago
1
🔌 cwltool/sbpack compatibility
#30
migbro
closed
2 years ago
0
GRCh38_v27_CTAT_lib_Feb092018.plug-n-play.tar.gz is no longer available
#29
tgambin
opened
2 years ago
2
Update strand parse and deprecate old workflow
#28
sickler-alex
closed
3 years ago
0
add link to references to WFs
#27
jharenza
closed
2 years ago
1
🐛 update suggested file paths
#26
dmiller15
closed
3 years ago
0
Sync PR Template with Template Repo
#25
github-actions[bot]
closed
3 years ago
0
✨ adds gha to keep pr template in sync
#24
dmiller15
closed
3 years ago
0
ID clashes for arriba and kallisto
#23
illusional
opened
3 years ago
0
🐳 migrated kfdrc dockers to d3b-bixu
#22
dmiller15
closed
3 years ago
2
⚾️ sample name renamed to basename
#21
dmiller15
closed
3 years ago
0
✨ added new annofuse wf to main rnaseq wf
#20
dmiller15
closed
3 years ago
0
🌎 updated file ids to public versions
#19
dmiller15
closed
4 years ago
0
🚃 create pubapp
#18
dmiller15
closed
4 years ago
0
🐛 fixes for se processing
#17
dmiller15
closed
4 years ago
0
📙🔨 Updated docker pull
#16
migbro
closed
4 years ago
0
✨ Single End Support
#15
dmiller15
closed
4 years ago
10
:wrench: update a number of tools and the workflow to handle single end samples
#14
bmennis
closed
4 years ago
1
:hammer: added logic to handle when both inputs are empty
#13
migbro
closed
4 years ago
0
Mb update annofuse read expr
#12
migbro
closed
4 years ago
1
:hammer: minor cosmetic changes to output file ext
#11
migbro
closed
4 years ago
0
Update README.md
#10
migbro
closed
4 years ago
0
update README
#9
jharenza
closed
4 years ago
0
:book: bold new feature update
#8
migbro
closed
4 years ago
1
Next