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copykat
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Issue about dlm
#73
Junedays
opened
2 years ago
2
Segmentation by chromosome arm size
#72
jgarces02
opened
2 years ago
0
no applicable method for 'dlmSmooth' applied to an object of class "c('double', 'numeric')"
#71
050114dragon
opened
2 years ago
6
MHC genes and cell cycle genes are not filtered out in mouse version
#70
sky1ove
opened
2 years ago
0
Error while producing results
#69
Laolga
opened
2 years ago
0
Can I use the results of copykat to build phylogenetic tree?
#68
hahia
opened
2 years ago
1
warnings
#67
zhouyao315
opened
2 years ago
0
Copykat in non-tumor disease
#66
MeiShuhao
closed
2 years ago
1
run copykat on integrated datasets?
#65
aelhossiny
closed
2 years ago
1
Error about object 'res' not found
#64
BertramLoong
closed
2 years ago
1
mouse cnv output has no jpg review format. only pdf format
#63
MinBio
closed
2 years ago
1
Inconsistent bin size
#62
Laolga
closed
2 years ago
1
What does the NA mean in the result?
#61
Pang-Ka
closed
2 years ago
1
GRCh37/hg19 annotation
#60
ahwanpandey
closed
2 years ago
1
Are default copykat settings appropriate for single nucleus RNAseq?
#59
TatyanaLev
closed
2 years ago
1
Cell filtering before copykat?
#58
Larrycpan
closed
2 years ago
2
Error all cells are filtered when using copykat on anndata object converted to seurat object
#57
cmills2
closed
2 years ago
2
confusion of prediction results
#56
songmingl
closed
2 years ago
6
Issue recapitulating results for IDC1
#55
inofechm
closed
2 years ago
2
Is copykat suitable for analyzing Smart-seq2 single cell sequencing data？
#54
leozinclzy
closed
2 years ago
2
infer subpopulation in more than 100000 cells
#53
rained1989
closed
2 years ago
1
Error in write.table(res, paste(sample.name, "prediction.txt", sep = ""), :
#52
Roger-GOAT
closed
2 years ago
6
warning in copykat
#51
YuanqiangDuan
closed
2 years ago
1
ValueError: Value passed for key 'scanorama_embedding' is of incorrect shape.
#50
zappuf
closed
2 years ago
1
normal given cells annotated as aneuploid
#49
Pazuzzilla
closed
2 years ago
1
'mc.cores' > 1 is not supported on Windows
#48
xiangwei6963
closed
2 years ago
2
copykat output files
#47
sadiexiaoyu
closed
2 years ago
1
Any interests in making copyKat support python?
#46
hyjforesight
closed
2 years ago
5
Memory usage for big scale data
#45
heshidian
closed
2 years ago
2
Segmentation ignores chromosome boundaries
#44
teng-gao
closed
2 years ago
1
Heatmap output doesn't seem consistent with expected output
#43
suneetz
closed
2 years ago
1
can we show specific gene in the heatmap?
#42
xinmiaoyan
closed
2 years ago
1
encountering figure margins too large error when running heatmap.3 function
#41
suneetz
closed
3 years ago
2
Create versioned release
#40
grst
closed
2 years ago
3
Warning! Not convergent! - Step 4: Measuring baselines
#39
wenkho
closed
2 years ago
4
dist(0) problem
#38
eric423627
closed
2 years ago
1
Meaning of dV=0.16, dW=0.001 when smoothing data
#37
ptdtan
closed
2 years ago
1
copy number values
#36
ccbio
closed
2 years ago
3
labeling chromosome
#35
AnjanaS-code
closed
2 years ago
3
Consultion
#34
lyuhongyi
closed
2 years ago
1
using normalized data as input
#33
zhangguy
closed
2 years ago
1
extracting subclone info after running heatmap.3
#32
ckb19
closed
2 years ago
2
in the pred.test，only 4925 left，how this happened，can i keep all the cell？
#31
lxwang326
closed
2 years ago
3
The species on copykcat
#30
honghh2018
closed
2 years ago
2
all cell filterred
#29
honghh2018
closed
2 years ago
2
Why these genes were selected
#28
zqzneptune
closed
2 years ago
2
running copykat with a sparse matrix
#27
hartlama
closed
3 years ago
1
error:dim(X) must have a positive length
#26
sunnyyakima
closed
2 years ago
3
parameter to decrease stringency of aneuploid classification
#25
hartlama
closed
3 years ago
1
Scanpy Support
#24
mbcouger
closed
2 years ago
4
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