nmfs-ost ss3-source-code issues

nmfs-ost / ss3-source-code

The source code for Stock Synthesis (SS3).

https://nmfs-ost.github.io/ss3-website/

Creative Commons Zero v1.0 Universal

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issues

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fix for forecast seasonal recruitment

#606 Rick-Methot-NOAA closed 6 days ago
0
[Bug]: Time_Series output of forecast recruitment in a seasonal model

#605 Rick-Methot-NOAA opened 6 days ago
1
[Feature]: One step ahead (OSA) residuals for composition data

#604 Rick-Methot-NOAA opened 1 week ago
0
Update workflows to add more detailed descriptions; put condition on run-ss3-with-est

#603 e-perl-NOAA closed 3 weeks ago
1
[Feature]: Augment Mgmt_Quant report with recruitment values

#602 Rick-Methot-NOAA opened 1 month ago
0
update discard warning plus one

#601 Rick-Methot-NOAA closed 1 month ago
1
Add more detail for "catches" warning

#600 iantaylor-NOAA closed 1 month ago
1
[Feature]: Cohort growth deviation added to Linf (or L2)

#599 peterkuriyama-NOAA opened 2 months ago
1
[Bug]: "inf" value in bootstrap of mean size-at-age data for ages with sample size 0

#598 iantaylor-NOAA opened 2 months ago
0
[Feature]: add link to artifact of exe build to pull request discussion?

#597 iantaylor-NOAA opened 2 months ago
0
add offset option for ENV Q

#596 Rick-Methot-NOAA closed 1 month ago
2
[Feature]: Add 2-parm catchability (Q) option with offset and slope

#595 Rick-Methot-NOAA closed 1 month ago
2
[Feature]: Mean recruitment adjustment

#594 Rick-Methot-NOAA opened 2 months ago
10
[Bug]: Possible bug relating to the estimation of Q_extra_SD when doing NUTS MCMC

#592 alexpbell closed 2 months ago
10
add fatal error when using MCMC with recdev option 1

#590 iantaylor-NOAA closed 1 month ago
3
change multiyr average approach

#589 Rick-Methot-NOAA closed 2 months ago
1
[Feature]: Revise recdev_bias adjustment to be a customizable list of line segments

#588 Rick-Methot-NOAA opened 3 months ago
0
Build macos 14

#587 e-perl-NOAA closed 2 months ago
1
[Feature]: 10+ multiyear average F_std_scaling; with change to log(ratio) approach

#586 HaikunXu closed 2 months ago
3
Build admb and ss3 from source github action

#585 e-perl-NOAA closed 3 months ago
1
#579 update block warning

#583 Rick-Methot-NOAA closed 3 months ago
0
refine echoinput messages and errors in Q_setup

#582 iantaylor-NOAA closed 3 months ago
4
refactor Fmethod controls and expand Fmethod 4 capabilities

#581 Rick-Methot-NOAA closed 3 months ago
0
Unify F approach

#580 Rick-Methot-NOAA closed 3 months ago
4
Extending time-blocks into forecast years

#579 IJStewart closed 3 months ago
1
[Refactor]: create function for t=f(y,s)

#578 Rick-Methot-NOAA opened 4 months ago
0
570 simple fix for FM4

#577 Rick-Methot-NOAA closed 4 months ago
0
570 bug fmethod 4 not defaulting to hybrid

#576 Rick-Methot-NOAA closed 4 months ago
1
[Feature]: add discard body weights to wtatage.ss

#575 Rick-Methot-NOAA opened 4 months ago
0
[workflows]: Test ADMB-13.2pre docker images

#574 e-perl-NOAA closed 2 months ago
32
[Refactor]: DM for age discard

#573 Rick-Methot-NOAA opened 4 months ago
0
Add disc age #569

#572 Rick-Methot-NOAA closed 4 months ago
3
[Bug]: FMethod 4 not defaulting to hybrid

#570 Rick-Methot-NOAA closed 3 months ago
0
[Bug]: discard-at-age output missing for forecast years when using age-specific discard

#569 Rick-Methot-NOAA closed 4 months ago
0
Update workflows admb docker

#568 e-perl-NOAA closed 5 months ago
8
[Bug]: Report file writing issue

#567 kinmic closed 4 months ago
7
Fix reference to par files in est workflow to ss3.par

#564 e-perl-NOAA closed 5 months ago
15
[Fix]: Fix workflows to use docker image & fix build-ss3-warnings.yml

#563 e-perl-NOAA closed 1 month ago
4
Add additional warnings regarding survey units and q

#562 Rick-Methot-NOAA opened 5 months ago
0
Update makefile

#561 Rick-Methot-NOAA closed 4 months ago
27
[Bug]: crash when do_recdev = 0 is combined with SRR option 7 (but work-around is available)

#560 iantaylor-NOAA opened 5 months ago
0
Add log(Pval) term to lognormal prior

#558 quang-huynh closed 5 months ago
6
fix_lbin_in_FIT_age #556

#557 Rick-Methot-NOAA closed 5 months ago
2
[Bug]: Fit_Age and compreport.sso are showing different values for lbin_lo

#556 Rick-Methot-NOAA closed 5 months ago
0
add warning when addtocomp is not > 0

#555 iantaylor-NOAA closed 5 months ago
3
Update devcontainer.json - add docker

#554 e-perl-NOAA closed 5 months ago
1
[Feature]: Add full likelihood components for likelihoods, random effects and priors/penalties

#553 Cole-Monnahan-NOAA opened 6 months ago
6
Retry ADMB docker images

#552 johnoel closed 5 months ago
29
add .devcontainer

#551 e-perl-NOAA closed 6 months ago
0
Admb docker images

#550 e-perl-NOAA closed 5 months ago
12