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rcedgar
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muscle
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
https://drive5.com/muscle
GNU General Public License v3.0
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increase the threads
#82
chaoyanggu
closed
1 week ago
4
Clarification regarding letterconf usage
#81
microbearlogist
opened
4 weeks ago
2
Update bioconda-recipe to support osx-arm64
#80
isaacovercast
closed
2 months ago
3
2 nts are "cut" from the rest.
#79
0xorial
closed
3 months ago
2
How can I download v5 muscle?
#78
brilliant2643
closed
4 months ago
5
Error in `muscle': free(): invalid next size (normal): 0x00002b09305f4a40 ***
#77
Oceazh
closed
6 months ago
0
segmentation fault muscle -align testing.fa -output alignment.afa
#76
m-leitman
closed
2 months ago
3
Fatal error: allocflat.cpp(15) assert failed: uint64(Size) == Size64
#75
m-leitman
closed
2 months ago
1
python version of the code？
#74
2000lyn
closed
2 months ago
1
Support for Linux aarch64
#73
martin-g
closed
7 months ago
0
Running time for large numbers of sequences
#72
Tang-pro
closed
7 months ago
0
alignment error when short sequence
#71
orangeSi
closed
7 months ago
5
Segmentation fault : only a few small sequences to align
#70
JulieBorgel
closed
9 months ago
1
Segmentation fault (core dumped)riors
#69
MHassanSaeed
closed
2 months ago
2
fix compile error for unknown target
#68
orangeSi
closed
1 year ago
0
usorter.cpp(88) assert failed: L >= m_WordLength
#67
yifengyuan
closed
1 year ago
2
Specifying threads
#66
bioinfo007
closed
2 months ago
4
If is possible to release Muscle V5 version which has no dependence of omp.h?
#65
orangeSi
closed
1 year ago
8
Automatic optimal number of threads
#64
dreyes17
closed
1 year ago
2
Memory Object Too Large due to very long sequences
#63
bioinfonerd
closed
1 year ago
2
@ in output filename required for -perm all with -super5
#62
DeadlineWasYesterday
closed
2 months ago
1
gap penlty
#61
naama68
closed
1 year ago
2
Memory Object >4Gb error
#60
czhou135
closed
1 year ago
6
Can muscle be made to take two or more non-file cli arguments (input streams)? [v3.8]
#59
rtviii
closed
1 year ago
1
Resampling Clarification
#58
mcale6
closed
1 year ago
5
*** Error in `muscle': double free or corruption (out): 0x00007ffdb8176090 ***
#57
Wendy361
closed
1 year ago
2
how to use it in .net core? any one who can help me? thank you!
#56
qiuqingpo
closed
1 year ago
0
Where did profile-profile alignment go in v5?
#55
rtviii
closed
2 months ago
3
add aarch64
#54
lukaszsobala
closed
7 months ago
2
add aarch64 build action
#53
lukaszsobala
closed
1 year ago
1
Aarch64 muscle built from source fails
#52
lukaszsobala
closed
7 months ago
19
Muscle5.1 alignment error
#51
navkahlon240
closed
1 year ago
1
gcc
#50
besibo
closed
1 year ago
0
Segmentation fault while running muscle
#49
navkahlon240
closed
1 year ago
3
Multiple fasta files error
#48
navkahlon240
closed
1 year ago
1
Update workflow for portable macOS binary (remove need to install gcc@11), fixes #21
#47
blake-riley
closed
2 months ago
4
Minor: interface change from 3.8 to 5.1 may benefit from more helpful error message
#46
jweile
closed
1 year ago
1
Request: don't rearrange sequence order
#45
SethMusker
opened
1 year ago
2
allocflat.cpp(15) assert failed: uint64(Size) == Size64
#44
NicMAlexandre
closed
1 year ago
2
automatically reverse-complement nt sequences
#43
TDDB-limagrain
closed
2 months ago
2
Improve multi-threading efficiency?
#42
lukaszsobala
closed
2 years ago
2
Cannot open xxx.fas , errno=2 No such file or directory
#41
jljy47
closed
2 years ago
3
Floating point exception error (core dumped) running super5
#40
dnolin13
closed
1 year ago
7
Can you provide test documents？
#39
HuangseYuanli
closed
2 years ago
2
Fatal error UngappedSeq != m_UngappedSeqs[0] from efa_explode on resampled MSAs
#38
rcedgar
opened
2 years ago
1
FATAL: kernel too old
#37
jingydz
closed
2 years ago
0
dispersion value meaning
#36
Adarsh931
closed
2 years ago
12
Move the random number generation to a dedicated object
#35
althonos
closed
2 months ago
6
double free or corruption (!prev)eriors
#34
Adarsh931
closed
1 year ago
2
Error while using super5 command
#33
ChongLC
closed
2 years ago
1
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