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sanger-pathogens
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snp-sites
Finds SNP sites from a multi-FASTA alignment file
http://sanger-pathogens.github.io/snp-sites/
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Missing data in vcf output format
#64
MafaldaSFerreira
opened
7 years ago
2
Print to screen
#63
robynslee
closed
6 years ago
2
Output invariant sites and nucleotide frequencies
#62
EpiDemos82
opened
7 years ago
5
Gaps not reported in output?
#61
mgalardini
closed
7 years ago
2
Docker file typo
#60
tseemann
closed
6 years ago
1
Jk seg fault
#59
andrewjpage
closed
7 years ago
0
segmentation fault with `-b` option
#58
kwongj
closed
7 years ago
4
Segmentation fault with larger sequences (on Desktop and HPC)
#57
CMWbio
closed
7 years ago
3
update LICENSE and AUTHORS
#56
ssjunnebo
closed
7 years ago
0
brew recipe needs to be updated to the latest release.
#55
andersgs
closed
8 years ago
2
Linuxbrew installation issue (links issue)
#54
rbutleriii
closed
8 years ago
1
segmentation fault in one fasta but not on the other
#53
hongsamL
closed
8 years ago
5
Didn't mean to open this
#52
tseemann
closed
8 years ago
1
Failing tests on various platforms
#51
satta
closed
8 years ago
3
allow pure bases and monomorphic, making it work with BEAST
#50
andrewjpage
closed
8 years ago
0
make sure original API is not changed
#49
satta
closed
8 years ago
1
update to 2.2.1
#48
andrewjpage
closed
8 years ago
0
adjust manpage
#47
satta
closed
8 years ago
0
output reference and change name to snp-sites
#46
andrewjpage
closed
8 years ago
0
Build is failing on Mac OS
#45
bouzidnm
closed
8 years ago
3
specify reference sequence
#44
george-githinji
closed
8 years ago
2
Add Arxiv paper link to README.md
#43
tseemann
closed
8 years ago
1
Ensure C99 compliance
#42
AidanDelaney
closed
8 years ago
0
Test data
#41
andrewjpage
closed
8 years ago
0
Running the clang static analyser turns up an issue with unintialised…
#40
AidanDelaney
closed
8 years ago
0
possible to convert to redhat?
#39
ntchuang
closed
8 years ago
1
Autotoolize checking for dependencies
#38
satta
closed
8 years ago
2
Reduce times input file is opened
#37
andrewjpage
closed
8 years ago
0
Bump version to 2.0.3
#36
bewt85
closed
8 years ago
0
496468: Allow '?' in fasta input
#35
bewt85
closed
8 years ago
1
Major cleanup to use standard C string functions
#34
tseemann
closed
9 years ago
0
make check => cannot find -lsubunit
#33
tseemann
closed
8 years ago
2
Add -V version flag (Issue #27)
#32
tseemann
closed
9 years ago
0
Use stdio FILENAME_MAX for path char[] sizes
#31
tseemann
closed
9 years ago
1
How do we run the tests?
#30
tseemann
closed
9 years ago
1
autoreconf -i warnings => option 'subdir-objects' is disabled
#29
tseemann
closed
8 years ago
1
Option to disallow gap and/or N and/or non-AGTC ?
#28
tseemann
closed
4 years ago
4
Add a --version switch?
#27
tseemann
closed
9 years ago
0
Opens <file> twice?
#26
tseemann
closed
8 years ago
1
First sequence in alignment is "special" ?
#25
tseemann
closed
9 years ago
0
FYI - updated brew package to 2.x series
#24
tseemann
closed
9 years ago
0
fix recent compilation failure in Debian
#23
satta
closed
9 years ago
0
Remove a tab in VCF header
#22
bewt85
closed
9 years ago
0
Added bt5 and Jorge emails (Jorge as path-help)
#21
aslett1
closed
9 years ago
0
Add reference sequence length to VCF output
#20
bewt85
closed
9 years ago
0
Change output format to show Genotype rather than Alt Base
#19
bewt85
closed
9 years ago
3
Reformat README
#18
bewt85
closed
9 years ago
0
travis install check
#17
andrewjpage
closed
11 years ago
0
travis autoreconf
#16
andrewjpage
closed
11 years ago
0
travis ci
#15
andrewjpage
closed
11 years ago
0
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