issues
search
sanger-pathogens
/
snp-sites
Finds SNP sites from a multi-FASTA alignment file
http://sanger-pathogens.github.io/snp-sites/
Other
233
stars
50
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
why snp-sites generated variations numbers different snippy mapping results
#113
Zjianglin
opened
3 months ago
0
Warning: No SNPs were detected so there is nothing to output
#112
sreerampeela
opened
11 months ago
1
How to know the interested SNP position in genome?
#111
snackens
opened
1 year ago
0
segmentation fault
#110
BettyAC
opened
1 year ago
2
How to specify the reference sequence
#109
ACColin
opened
1 year ago
0
./configure: line 3036: syntax error near unexpected token `CHECK,check' ./configure: line 3036: `PKG_CHECK_MODULES(CHECK,check >= 0.8.2,have_check="yes",'
#108
nick-pestell
opened
2 years ago
0
How to understand `monomorphic sites`?
#107
xuechunxu
opened
2 years ago
1
Recommendation for multiple genome alignment
#106
snayfach
opened
2 years ago
1
What does *STAR* in ALT stand for
#105
jielab
opened
3 years ago
3
snp-sites for all ~2 million SARS-COV-2 genomes in GISAID
#104
jielab
opened
3 years ago
1
Improvement: let user specify pure and ambiguous bases
#103
arturotorreso
opened
3 years ago
0
snp-sites docker install issue
#102
AgatheJouet
opened
3 years ago
0
error: alignment contains sequences of unequal length
#101
rderelle
opened
3 years ago
8
Travis-ci:added support for ppc64le
#100
sanjaymsh
closed
3 years ago
1
Is there a way to extract SNP mutations form the VCF file ?
#99
ASQWZXED
opened
3 years ago
0
How to manage heterozygosity in SNP conversion?
#98
Pryfed
opened
3 years ago
0
snp-sites -c doesn't produce recognisable alignment for IQtree
#97
martinastoycheva
opened
3 years ago
1
Warning: No SNPs were detected so there is nothing to output
#96
pgcudahy
opened
4 years ago
1
32 bit signed integer error
#95
ethering
opened
4 years ago
1
snp-sites do not see do deletion events
#94
bioinfornatics
opened
4 years ago
1
snps-sites tool help
#93
cmaquez
opened
4 years ago
0
Remove snpsites-help email
#92
garethpeat
closed
4 years ago
0
how to visualize VCF file in artemis?
#91
tushar-ahmed
opened
4 years ago
0
Possibility to specify known reference
#90
jcgrenier
opened
4 years ago
2
apt-get installation of snp-sites
#89
nbawe
closed
4 years ago
1
specify order of output of -C option in help message
#88
amilesj
opened
4 years ago
2
Reformat all code (using CLion)
#87
pvanheus
closed
4 years ago
0
add email for Peter van Heusden
#86
pvanheus
closed
4 years ago
0
Rewrite how count_constant_sites is implemented, add test
#85
pvanheus
closed
4 years ago
0
Add output of only count of constant sites
#84
pvanheus
closed
4 years ago
1
Problem with installation via Bioconda
#83
Martinique-F
closed
5 years ago
2
functionality of -b option alone?
#82
eam12
opened
5 years ago
1
line 3030: syntax error near unexpected token `CHECK,check' on REHL 7.5
#81
Aworwui
closed
4 years ago
1
Is there a sequence length limit? "Warning: No SNPs were detected so there is nothing to output."
#80
FatihSarigol
closed
4 years ago
1
Is the reference genome used when using the snp-sites software?
#79
youlijun
closed
4 years ago
1
Segmentation error
#78
besnarda
closed
4 years ago
1
Error with Mauve alignment input
#77
jglenn72
closed
4 years ago
1
Pipe into snp-sites
#76
ssjunnebo
opened
5 years ago
0
627258 codecov
#75
ssjunnebo
closed
5 years ago
0
added changelog
#74
ssjunnebo
closed
5 years ago
0
Include tests in README
#73
ssjunnebo
closed
5 years ago
0
SegFault for unknown reason
#72
flashton2003
closed
5 years ago
1
Recommended workflow?
#71
stevendavis
opened
6 years ago
0
Include docker and conda badges
#70
ssjunnebo
closed
6 years ago
0
No ./configure in release tarball despite docs
#69
tseemann
opened
6 years ago
0
Info in VCF output format
#68
ricardoruiz2897
closed
6 years ago
1
fixed Dockerfile
#67
trstickland
closed
6 years ago
0
Keeping indels, projecting reference coordinates?
#66
LovellHAGSC
opened
6 years ago
1
update readme
#65
ssjunnebo
closed
6 years ago
0
Missing data in vcf output format
#64
MafaldaSFerreira
opened
6 years ago
2
Next