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torognes
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swarm
A robust and fast clustering method for amplicon-based studies
GNU Affero General Public License v3.0
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pooled samples?
#132
dcm9123
closed
5 years ago
1
abundance values generator?
#131
dcm9123
closed
5 years ago
2
Measure code coverage
#130
frederic-mahe
closed
4 years ago
9
Makefile: add an "install" recipe
#129
frederic-mahe
closed
5 years ago
7
Error occur in amplicon_contingency_table.py
#128
debjitde01
closed
5 years ago
6
Fastidious Bloom filter requires more memory than indicated in the help
#127
frederic-mahe
closed
5 years ago
4
minor unfreed memory allocation (all swarm versions)
#126
frederic-mahe
closed
5 years ago
4
incomplete creation of microvariants (short sequences) in swarm 3.0
#125
frederic-mahe
closed
5 years ago
24
small memory leak when using the --log option
#124
frederic-mahe
closed
5 years ago
2
memory-allocation error in swarm 3 fastidious
#123
frederic-mahe
closed
5 years ago
7
(not so) small tasks around swarm 3.0
#122
frederic-mahe
closed
3 years ago
7
segmentation faults with the zobrist branch
#121
frederic-mahe
closed
5 years ago
2
Benign buffer overflow when parsing fasta sequences
#120
frederic-mahe
closed
5 years ago
0
ikos static analyzer
#119
frederic-mahe
closed
5 years ago
3
swarm output file
#118
tilaknayak
closed
5 years ago
3
Update link in readme
#117
mooreryan
closed
5 years ago
1
Problem with fasta header ???
#116
davidvilanova
closed
5 years ago
8
Potential vulnerabilities identified by Flawfinder
#115
frederic-mahe
closed
5 years ago
2
improve groff code
#114
frederic-mahe
closed
5 years ago
1
Compatibility with old GCC versions?
#113
frederic-mahe
closed
6 years ago
5
Compilation warnings with the new GCC 8.0
#112
frederic-mahe
closed
6 years ago
2
Can you update bioconda with latest ?
#111
davidvilanova
closed
6 years ago
2
Swarm does not start clustering in rare cases
#110
torognes
closed
6 years ago
9
segmentation fault error when using swarm with -d 1
#109
mariabernard
closed
6 years ago
8
Wrong cluster id in the uc output
#108
yoann-dufresne
closed
6 years ago
10
Port Swarm to other platforms
#107
torognes
closed
5 years ago
11
bug in -w output when using the -a option
#106
frederic-mahe
closed
7 years ago
1
Swarm doesn't exit when run without any inputs
#105
complexgenome
closed
6 years ago
8
static analysis of swarm's C++ code (cppcheck)
#104
frederic-mahe
closed
4 years ago
12
not all memory is freed when swarm exits with an error
#103
frederic-mahe
closed
7 years ago
2
bug in abundance value parsing?
#102
frederic-mahe
closed
7 years ago
8
How to handle duplicated parameters or options?
#101
frederic-mahe
closed
7 years ago
5
Error message "‘asprintf’ was not declared in this scope" when compiling in Cygwin
#100
MVEverett
closed
7 years ago
7
GCC warnings when using `-Wextra`
#99
frederic-mahe
closed
7 years ago
4
Writing seeds > 100%
#98
lczech
closed
7 years ago
3
Visualize swarms for d>1
#97
steph43
closed
7 years ago
5
Errors in SIMD alignment code
#96
torognes
closed
7 years ago
2
Alignments use a slightly too large gap extension penalty when d>1
#95
torognes
closed
7 years ago
3
Alignment and identity percentage in UCLUST file may be wrong
#94
torognes
closed
7 years ago
3
Why is U replaced by T when outputting the seeds
#93
a1an77
closed
7 years ago
2
Put the cluster seed identifier in the --seeds output
#92
a1an77
closed
7 years ago
2
Remove abundance from identifiers in output file
#91
a1an77
closed
7 years ago
2
Abundance annotation not recognised
#90
a1an77
closed
7 years ago
8
Develop a swarm-plugin for Qiime 2
#89
frederic-mahe
opened
7 years ago
10
average pairwise distances of each OTU
#88
ranocchia4
closed
7 years ago
3
Speed ??
#87
davidvilanova
closed
7 years ago
3
Add support for unseekable pipes
#86
frederic-mahe
closed
7 years ago
1
Function fatal() declared twice
#85
frederic-mahe
closed
7 years ago
3
Compilation with GCC 6 fails
#84
frederic-mahe
closed
8 years ago
2
Avoid producing microvariants if there is no amplicon of that length [dead end]
#83
frederic-mahe
closed
8 years ago
2
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