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ucsc-cgp
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cgp-deployment
The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.
https://ucsc-cgp.org
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Create new release of commons.ucsc-cgp-dev.org
#85
cricketsloan
closed
5 years ago
0
Updated Docker image release versions for new cgp-deployment release
#84
mjkrause
closed
5 years ago
0
Remove nginx dev option for common containers (resolves #82)
#83
mjkrause
closed
5 years ago
0
Remove `dev` installation option from `cgp-deployment`, `feature/common`
#82
cricketsloan
closed
5 years ago
0
Install Bootstrap doesn't initialize the dos-dss-service variable in the .env file
#81
cricketsloan
opened
5 years ago
0
Update azul image to commons-0.1.11-beta
#80
jessebrennan
closed
5 years ago
0
Automated Testing Improvements for CGP
#79
cricketsloan
closed
5 years ago
1
Update `integration test` (fixes #77)
#78
mjkrause
closed
5 years ago
0
`integration.sh` to test deployment of feature/commons still looking for `redwood` storage
#77
cricketsloan
closed
5 years ago
0
Fix release versions in `prod.yml` (no assoc. issue)
#76
mjkrause
closed
5 years ago
2
Remove code that supports the bagit-FC-lambda-based export to FC
#75
cricketsloan
closed
5 years ago
1
Corrected paragraph explaining role of Google Client and Secret (fixes #73)
#74
mjkrause
closed
5 years ago
1
Clarify significance of logging into Boardwalk in README
#73
mjkrause
closed
5 years ago
0
Update README once persistent-S3-BDBags are implemented (resolves #55)
#72
mjkrause
closed
5 years ago
0
Changed environment variables relating to BDBag-to-S3 (resolves #61)
#71
mjkrause
closed
5 years ago
1
Update docker images for azul and dashboard
#70
jessebrennan
closed
5 years ago
0
Spaces in install_bootstrap values can throw errors
#69
cricketsloan
opened
5 years ago
0
When containers are brought down we should probably ---remove-orphans
#68
cricketsloan
opened
5 years ago
1
Update images for production
#67
jessebrennan
closed
5 years ago
0
Add aws region to azul
#66
jessebrennan
closed
5 years ago
0
Remove endpoint variable being passed to Boardwalk (fixes #64)
#65
coverbeck
closed
5 years ago
1
Remove endpoint variable being passed to Boardwalk
#64
cricketsloan
closed
5 years ago
0
Do not set BW_DATA_URL for Boardwalk in docker compose files
#63
cricketsloan
closed
5 years ago
0
Add environment variables for BDBag-to-S3 to dcc-dashboard-service (resolves #61)
#62
mjkrause
closed
5 years ago
4
Add AZUL_S3_AWS_REGION and AZUL_PRESIGNED_URL_EXPIRATION to dcc-dashboard-service
#61
cricketsloan
closed
5 years ago
1
Remove postgres variables from dashboard install
#60
cricketsloan
closed
6 years ago
1
Add AWS vars to dashboard and fix encryption key
#59
jessebrennan
closed
6 years ago
1
Change AWS variable names in mustache template for Boardwalk (fixes #49)
#58
mjkrause
closed
6 years ago
0
Change AWS variable names in mustache template for Boardwalk
#57
cricketsloan
closed
6 years ago
0
Update installer (resolves DEP-21)
#56
jessebrennan
closed
6 years ago
2
Update README in cgp-deployment once persistent-S3-BDBags are implemented
#55
cricketsloan
closed
5 years ago
0
Adding env. vars. AWS_ACCESS_KEY and AWS_SECRET_ACCESS_KEY to installation files (#49).
#54
mjkrause
closed
6 years ago
0
change `install_bootstrap.sh` to accommodate for S3-persistent BDBag functionality
#53
cricketsloan
closed
6 years ago
1
Add AZUL_S3_BUCKET environment variable to `install_bootstrap.sh` and make changes to mustache template.
#52
mjkrause
closed
6 years ago
1
Corrected path to build dcc-dashboard-service service for dev-mode.
#51
mjkrause
closed
6 years ago
0
Correct build path for dcc-dashboard-service in `dev-mode`
#50
cricketsloan
closed
6 years ago
0
set up AWS credentials for S3-persistant BDBag as part of cgp-deployment
#49
cricketsloan
closed
6 years ago
2
Update Installer to prompt for Authn/z information
#48
cricketsloan
closed
6 years ago
0
Update README to contain description to set up an S3 bucket for BDBag.
#47
mjkrause
closed
6 years ago
1
two changes to enable Boardwalk to run in dev mode
#46
mjkrause
closed
6 years ago
0
Feature/update readme
#45
mjkrause
closed
6 years ago
0
Feature/deploy dev
#44
mjkrause
closed
6 years ago
0
Feature/update readme
#43
mjkrause
closed
6 years ago
1
Sequence Diagrams for CGP Deployment
#42
cricketsloan
opened
6 years ago
2
Update dev deployment to use new DOS Azul URL
#41
cricketsloan
closed
6 years ago
0
Updated prod.yml to build using the commons-0.1.3-beta dcc-dashboard
#40
coverbeck
closed
6 years ago
0
edited release version to 0.1.5
#39
mjkrause
closed
6 years ago
0
Certificate Expired on charles.ucsc-cgp-dev.org
#38
cricketsloan
closed
6 years ago
1
Cgp-Deployment Doesn't work with Azul in dev mode
#37
cricketsloan
opened
6 years ago
0
Updated prod.yml to use commons-0.1.4-beta azul/webservice
#36
GPelayo
closed
6 years ago
0
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