issues
search
waldronlab
/
curatedMetagenomicDataCuration
Sample Metadata Curation for curatedMetagenomicData
https://waldronlab.io/curatedMetagenomicDataCuration/
28
stars
23
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Request update in HallAB_2017_metadata
#81
jarchana09
opened
4 weeks ago
0
Error getting curated metagenomics data
#80
jayeech
closed
1 month ago
0
Wrong study_name
#79
shbrief
opened
2 months ago
0
WindTT_2020 is missing NCBI_accession values
#78
harper357
opened
7 months ago
0
days_from_first_collection inaccuracies in HMP_2019_ibdmdb
#76
mruehlemann
closed
11 months ago
2
WenC_2017 and ChengpingW_2017
#75
Matt-Schmitz
opened
1 year ago
0
Assay Sometimes Has Zero Columns When counts = TRUE
#77
schifferl
opened
1 year ago
1
Add ZhangX_2015 study
#74
schifferl
opened
1 year ago
3
Add 4 studies to curatedMetagenomicDataCuration
#73
brymerr921
closed
1 year ago
0
How to run multiple SRR runs?
#72
zckoo007
opened
1 year ago
0
Add all HMP 1 healthy participants
#71
lwaldron
opened
1 year ago
0
typo steroids
#70
SilasK
closed
2 years ago
1
bodysite for HMP_2012 anerior_nares samples should be "nose" or "external nares", not "nasal cavity"
#69
lwaldron
opened
2 years ago
1
VincentC_2016 Antibiotics Metadata do not match published paper
#68
cmirzayi
closed
1 year ago
3
PehrssonE_2016 metadata file contains duplicate entries
#67
schifferl
closed
2 years ago
2
remove sample_id MSM6J2HB from HMP_2019_ibdmdb
#66
schifferl
closed
2 years ago
2
age doesn't correspond to age_category in some samples
#65
sdgamboa
closed
2 years ago
1
Control sample mislabeled as CRC in YuJ_2015 dataset
#64
CraigGin
closed
2 years ago
3
why in CosteaPI_2017 some samples only single end?
#63
luzhang321
closed
2 years ago
5
duplicate samples in NielsenHB_2014 & LeChatelierE_2013
#62
luzhang321
opened
2 years ago
2
SmitsSA_2017 sample info doesn't match supp.table
#61
luzhang321
closed
2 years ago
2
QinN_2014: duplicate accession
#60
qifei9
closed
2 years ago
1
KarlssonFH_2013: Nothing has been found for accessions
#59
qifei9
closed
2 years ago
1
XieH_2016 data, data accession number differ & disease status confused
#58
luzhang321
closed
2 years ago
2
CosteaPI_2017 disease status, healthy?
#57
luzhang321
closed
2 years ago
9
trailing decimal zero in a few variables
#56
schifferl
closed
3 years ago
2
change PMID specifications
#55
schifferl
closed
3 years ago
1
change col.name variables
#54
schifferl
closed
3 years ago
7
add col.class column
#53
schifferl
closed
3 years ago
1
Update Bengtsson-PalmeJ_2015_metadata.tsv
#52
edoardopasolli
closed
3 years ago
0
PMID for VatanenT_2016 is incorrect
#50
cmirzayi
closed
3 years ago
0
Cleanup/rename antibiotics_family column in combined metadata table
#51
cmirzayi
opened
3 years ago
7
Add datasite_name to template.csv
#48
jwokaty
closed
3 years ago
0
Merge smk508 branch
#47
lwaldron
closed
2 years ago
1
Combined Metadata Warnings
#46
jwokaty
closed
3 years ago
8
write data/combined_metadata.rda
#44
lwaldron
closed
3 years ago
3
make sure get_metadata() supports all studies
#43
lwaldron
closed
3 years ago
2
Additional metadata for Arumugam/Yu 2015, Hannigan 2018
#42
lwaldron
closed
3 years ago
3
Drafted an unpublished IBD Dataset from 2012
#41
smk508
closed
3 years ago
2
Drafted a metadata file for an unpublished study on SRA
#40
smk508
closed
3 years ago
1
Create function to add ontology columns to metadata table
#39
lwaldron
opened
3 years ago
1
Create function to load a curated metadata file by study name
#38
lwaldron
closed
3 years ago
1
Create a function that lists available curated metadata file names or file paths
#37
lwaldron
closed
3 years ago
1
Create a function that returns merged metadata
#36
lwaldron
closed
3 years ago
1
fix build badge
#35
lwaldron
opened
3 years ago
1
syntax checking results not updating
#34
lwaldron
closed
3 years ago
1
Typo in Heitz-BuschartA_2016
#32
edoardopasolli
closed
3 years ago
4
References updated in next update?
#31
morganx
closed
4 years ago
6
A tiny little curation typo
#33
morganx
closed
4 years ago
4
HMP2012: posterior fornix samples are incorrectly tagged as oral cavity
#30
schifferl
closed
5 years ago
2
Next