wyp1125 MCScanX issues - Githubissues

wyp1125 / MCScanX

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

http://chibba.pgml.uga.edu/mcscan2/

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issues

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Blast database

#76 Artifice120 opened 2 months ago
0
Warning during the installation and not gining out the results

#75 Shiva-brahmam03 opened 4 months ago
0
Issues during installation

#74 AlbertoBernacchi opened 6 months ago
1
Where is MCScanX.zip ??

#73 tallnuttrbgv closed 8 months ago
2
Blast+ blastn, No data in output file

#72 Rktf opened 10 months ago
1
ask help for draw collinearity only one chromsomoe use mcscanx

#71 Jiangjiangzhang6 opened 10 months ago
0
Can not find source code to download

#70 jiangqiuqiuu closed 1 year ago
1
Is it possible to generate collinearity file from 1 to 1 orthology tables?

#69 sheinasim opened 1 year ago
0
Low number of collinear genes

#68 DustinSokolowski opened 1 year ago
0
.tandem file was not created!

#67 sashulkaSh closed 1 year ago
1
using java

#66 YingyingZ9 opened 1 year ago
0
Question

#65 AndyLy2Zy opened 1 year ago
2
where can I find gtf_to_mcs.pl script

#64 LandiMi2 opened 1 year ago
0
Reading gff error: For input string: "2147774468"

#63 limengchen628 opened 1 year ago
2
Interpretation of Tandem files

#62 fafuyyk opened 1 year ago
1
Does MCScanX support multi-threading?

#61 sunjiahe-hub opened 1 year ago
0
Versioned release package for MCScanX

#60 jayramr opened 2 years ago
1
Format of xyz.homology?

#59 scottcain opened 2 years ago
3
detect_collinearity_within_gene_families.pl

#58 Lighter-k opened 2 years ago
0
Website not charging to download

#57 mpalmada opened 2 years ago
1
Use Github Actions as a CI for Linux x86_64 and aarch64

#56 martin-g closed 2 years ago
2
[Question] Is Linux ARM64 a supported architecture?

#55 julien-faye closed 7 months ago
1
Circle_plotter prints half circle with higher number of chromosomes

#54 jgnunes opened 2 years ago
1
No result after run commands

#53 pcampiteli opened 2 years ago
9
cannot open cds file

#52 ABDULLAHGUJJAR opened 2 years ago
0
The problem with drawing with the JAVA MCscanX

#51 Wenwen012345 opened 2 years ago
2
Docker container and working example data

#50 chriswyatt1 opened 2 years ago
0
request for your help to understand the syntheny plot

#49 amit4mchiba opened 2 years ago
1
Example DATA not working

#48 Dearbhaile opened 2 years ago
2
Epoch

#47 anandksrao opened 3 years ago
0
issus installing MCScanX

#46 alonziso opened 3 years ago
0
Wrong bed like file

#45 zoomlion opened 3 years ago
1
Restarting with -a option

#44 conJUSTover opened 3 years ago
0
Question regarding blast

#43 Karimi-81 opened 3 years ago
0
blastall: command not found

#42 ankush290307 opened 3 years ago
1
Increase the default length of species ID (from gff/bed)

#41 zhaotao1987 opened 3 years ago
1
File format gff or bed and what format?

#40 Dearbhaile opened 3 years ago
4
Mscanx Alignment e-value

#39 yuanning-li opened 3 years ago
0
Newick format

#38 mictadlo opened 3 years ago
0
limitation of species?

#37 Zhuxitong opened 3 years ago
0
MCScanX_h

#36 lisiruiyu opened 3 years ago
0
collinearity file does not have any collinear genes

#35 farhan-lab opened 3 years ago
11
missing homologs

#34 Everybody888 opened 3 years ago
3
family_circle_plotter error: cannot find symbol

#33 ijeremy closed 3 years ago
2
Cluster enabled version of MCScanX

#32 sanyalab closed 2 years ago
1
help for old version of MCScanX for parameter U

#31 altingia opened 4 years ago
0
Resolve getopt was not declared in this scope

#30 jdhayes closed 4 years ago
0
Resolve 'chdir' was not declared in this scope

#29 jdhayes closed 4 years ago
0
Resolve getopt was not declared in this scope

#28 jdhayes closed 4 years ago
0
Question on missing homologous pairs in the .colinearity file

#27 Mandyzg opened 4 years ago
2