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zavolanlab
/
bindz-rbp
RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.
https://github.com/zavolanlab/bindz-rbp
Apache License 2.0
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ci: remove old travis config
#64
AngryMaciek
closed
2 years ago
0
chore: bump up the version to 1.1.0
#63
AngryMaciek
closed
2 years ago
1
refactor: minor changes for next release version
#62
AngryMaciek
closed
2 years ago
0
refactor: correct column name
#61
AngryMaciek
closed
2 years ago
0
LogLik_ratio_fg_bg
#60
AngryMaciek
closed
2 years ago
0
refactor: adjust UI
#59
AngryMaciek
closed
2 years ago
1
feat: add output file in BED format
#58
AngryMaciek
closed
2 years ago
0
refactor: add onstart directive in Snakefile
#57
AngryMaciek
closed
3 years ago
1
ci: move from Travis to GH Actions
#56
AngryMaciek
closed
3 years ago
0
Refactor for ver 1.1.0
#55
AngryMaciek
closed
2 years ago
3
docs: change tool name to bindz
#54
AngryMaciek
closed
3 years ago
1
Project logo
#53
AngryMaciek
opened
3 years ago
2
Simplify the UI
#52
AngryMaciek
closed
2 years ago
2
Replace create outdir rule with onstart directive
#51
AngryMaciek
closed
3 years ago
0
Improve pipeline output
#50
AngryMaciek
closed
2 years ago
1
Move CI from Travis to GitHub Actions
#49
AngryMaciek
closed
3 years ago
1
New name
#48
AngryMaciek
closed
3 years ago
1
Update Readme with shields
#47
AngryMaciek
closed
4 years ago
0
Turn off Travis pipeline test with singularity
#46
AngryMaciek
closed
4 years ago
0
BindingScanner version 1.0.0
#45
AngryMaciek
closed
4 years ago
0
docs: General Information update
#44
AngryMaciek
closed
4 years ago
1
Include docs changes from Mihaela
#43
AngryMaciek
closed
4 years ago
0
Prepare the repoistory for zenodo
#42
AngryMaciek
closed
4 years ago
8
Unstable CI - bugfix
#41
AngryMaciek
closed
4 years ago
2
Add CI tests on macOS
#40
AngryMaciek
closed
4 years ago
0
Add pipeline testing with singularity
#39
krish8484
closed
4 years ago
5
Install singularity
#38
krish8484
closed
4 years ago
0
Add documentation for pipeline
#37
krish8484
closed
4 years ago
0
Paste motif name to left of sequence logo and increase width of graph
#36
krish8484
closed
4 years ago
7
Allow pwm motif files with . and fix logomaker issue
#35
krish8484
closed
4 years ago
1
Aesthetic modifications to the heatmap
#34
AngryMaciek
closed
4 years ago
0
Logomaker Error while plotting some sequence logos
#33
AngryMaciek
closed
4 years ago
0
Rule error while plotting seq.logos
#32
AngryMaciek
closed
4 years ago
0
Fix sequence logo parallelization bug
#31
krish8484
closed
4 years ago
3
plot_sequence_logos incorrect parallelization
#30
AngryMaciek
closed
4 years ago
0
add SLURM cluster execution
#29
AngryMaciek
closed
4 years ago
0
Use pdf instead of svg
#28
krish8484
closed
4 years ago
0
Add sequence logos to heatmap
#27
krish8484
closed
4 years ago
17
Heatmap annotation with motif's sequence logos
#26
AngryMaciek
closed
4 years ago
1
Plot sequence logos
#25
krish8484
closed
4 years ago
9
Non-reproducible md5 checksums of R plots
#24
AngryMaciek
closed
3 years ago
2
Generating sequence logos for the input PWMs
#23
AngryMaciek
closed
4 years ago
0
Add heatmap and heatmap script
#22
krish8484
closed
4 years ago
15
Sort tsv values according to binding-posterior
#21
krish8484
closed
4 years ago
0
Sort binding sites in the final table
#20
AngryMaciek
closed
4 years ago
0
Integration test script path fix
#19
AngryMaciek
closed
4 years ago
2
Extend pipeline to combine results in one tsv file
#18
krish8484
closed
4 years ago
9
Combine motif results
#17
krish8484
closed
4 years ago
4
Plot the binding sites for distinct motifs on the input RNA sequence
#16
AngryMaciek
closed
4 years ago
4
Combine MotEvo results into one TSV file
#15
AngryMaciek
closed
4 years ago
0
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