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AlexsLemonade
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OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Updated analysis: supp tables updates
#1260
jharenza
closed
2 years ago
2
Added S3 figure panels B, C, D
#1259
sjspielman
closed
2 years ago
8
Updated analysis: multivariate survival analysis to explore immune cell fractions' prognosis
#1258
jharenza
closed
2 years ago
1
survival analysis README added
#1257
runjin326
closed
2 years ago
7
Copy figure 3c into final directory
#1256
sjspielman
closed
2 years ago
1
Create additional panels for Figure S3
#1255
jharenza
closed
2 years ago
3
Create panels for Figure S2
#1254
jharenza
closed
2 years ago
10
Create updated panels for Fig 3
#1253
jharenza
closed
2 years ago
2
Updated analysis: oncoprint counts for manuscript
#1252
sjspielman
closed
2 years ago
3
Visualize quanTIseq fractions across molecular subtypes
#1251
sjspielman
closed
2 years ago
4
When MRAN is down, the build fails
#1250
sjspielman
opened
2 years ago
7
Updated analysis: add README to survival analysis module
#1249
jharenza
closed
2 years ago
1
Proposed Analysis: investigate whether signatures 3 and 18 also
#1248
jharenza
closed
2 years ago
2
README added for molecular subtype integrate module
#1247
runjin326
closed
2 years ago
8
Updated analysis: add cancer group info to README
#1246
jharenza
closed
2 years ago
1
update CAVATICA to v21
#1245
jharenza
closed
2 years ago
3
Workflow panel for figure 1
#1244
namansri468
closed
2 years ago
3
Incorporate quanTIseq into immune-deconv module
#1243
sjspielman
closed
2 years ago
0
Re-run notebooks in `tp53_nf1_score` module
#1242
sjspielman
closed
2 years ago
1
Remove immune-deconv module heatmaps
#1241
sjspielman
closed
2 years ago
3
Updated analysis: Remove xCell heatmap figures
#1240
sjspielman
closed
2 years ago
1
figure 5 correlation added
#1239
runjin326
closed
2 years ago
15
Updated analysis: Update immune deconvolution module to include xCell and quanTIseq
#1238
sjspielman
closed
2 years ago
1
Add scripts/modules for generating correlation plots for TP53 scores
#1237
runjin326
closed
2 years ago
1
Update links in data documentation
#1236
sjspielman
closed
2 years ago
3
Broken links in data-files-description.md
#1235
sjspielman
closed
2 years ago
1
Updated immune-deconv module README's xCell method description
#1234
sjspielman
closed
2 years ago
3
Updated analysis: Update immune-deconv analysis README
#1233
sjspielman
closed
2 years ago
1
Immune deconvolution updated heatmap
#1232
sjspielman
closed
2 years ago
7
Updated analysis: Manuscript Figure 5
#1231
sjspielman
closed
2 years ago
18
Updated analysis: Manuscript Figure 4 immune deconvolution panels
#1230
sjspielman
closed
2 years ago
5
Updated analysis: Sample distribution tables and supplemenetary figures
#1229
sjspielman
closed
2 years ago
1
Updated sample distribution panel for figure 1
#1228
sjspielman
closed
2 years ago
5
PR 2 of 2: Visualizing CNS mutational signature exposures
#1227
sjspielman
closed
2 years ago
32
Updated mutational-signatures: PR 1 of 2
#1226
sjspielman
closed
2 years ago
0
CI can fail due to docker time outs
#1225
sjspielman
opened
2 years ago
4
Switch CircleCI image to Ubuntu 20.04
#1224
jaclyn-taroni
closed
2 years ago
4
Updated analysis: Update palette df throughout
#1223
sjspielman
closed
2 years ago
1
Modified progressive / progressive disease post-mortem tumor descript…
#1222
sjspielman
closed
2 years ago
6
Separate color palettes for progressive/progressive post-mortem
#1221
sjspielman
closed
2 years ago
3
Updated analysis: Figures for mutational signatures fitting
#1220
sjspielman
closed
2 years ago
1
Issue #1218: Add param to mapping-histology-labels.Rmd
#1219
sjspielman
closed
2 years ago
1
Updated analysis: Add Rmarkdown parameter for data release name to mapping-histology-labels
#1218
sjspielman
closed
2 years ago
1
Consider distinguishing `Progressive` and `Progressive Disease - Post Mortem` in tumor descriptor palette
#1217
jaclyn-taroni
closed
2 years ago
2
Independent samples reselect
#1216
runjin326
closed
2 years ago
5
Change R^2 to R on SV vs. CNV breaks plot
#1215
LauraEgolf
closed
2 years ago
13
Updated analysis: chromothripsis module - change R^2 to R on scatterplot
#1214
LauraEgolf
closed
2 years ago
1
UMAP figures added
#1213
runjin326
closed
2 years ago
16
Prelim results added for survival analysis
#1212
runjin326
closed
2 years ago
14
Modification of survival analysis WIP PR
#1211
runjin326
closed
2 years ago
1
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