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AlexsLemonade
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OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Add PNG and PDF for compiled Figure S3
#1310
sjspielman
closed
2 years ago
2
Add PNG and PDF for compiled Figure S2
#1309
sjspielman
closed
2 years ago
0
Update cancer group abbreviations
#1308
sjspielman
closed
2 years ago
1
Updated analysis: check tp53 Figure 4B,C Ns
#1307
jharenza
closed
2 years ago
1
Updated analysis? update a few cancer group abbreviations
#1306
jharenza
closed
2 years ago
1
Add compiled Figure 1 as PDF and PNG
#1305
jaclyn-taroni
closed
2 years ago
2
Figure S1 as PNG and PDF
#1304
sjspielman
closed
2 years ago
6
Remove old PNGs from figures/pngs
#1303
jaclyn-taroni
closed
2 years ago
1
Alter Figure 1 tumor descriptor distribution plots to have more rows
#1302
jaclyn-taroni
closed
2 years ago
2
Copy panel 5C to figures/pdfs
#1301
sjspielman
closed
2 years ago
3
Contact Docker and CircleCI to ask permission to use icons in Figure 1 panel
#1300
jaclyn-taroni
closed
2 years ago
4
Deprecate correlation plots
#1299
sjspielman
closed
2 years ago
1
Deprecate tmb-compare module
#1298
sjspielman
closed
2 years ago
1
Deprecate supplementary figure correlation plots
#1297
sjspielman
closed
2 years ago
1
Include sample sizes in lancet figure
#1296
sjspielman
closed
2 years ago
3
Deprecate tmb-compare module
#1295
sjspielman
closed
2 years ago
1
Updated analysis: SNV Callers
#1294
sjspielman
closed
2 years ago
2
fix typo in Figure 4E
#1293
jharenza
closed
2 years ago
0
Figure 1: analysis/manuscript workflow overview panel + panel for potential path of analytical PR
#1292
jaclyn-taroni
closed
2 years ago
8
Remove old figures script
#1291
sjspielman
closed
2 years ago
0
Indicate which analyses are part of manuscript
#1290
sjspielman
closed
2 years ago
3
Key resources supplementary table
#1289
sjspielman
closed
2 years ago
12
Key resources table
#1288
sjspielman
closed
2 years ago
1
Document which analysis modules are in the manscript
#1287
sjspielman
closed
2 years ago
1
Update generate figures
#1286
sjspielman
closed
2 years ago
5
Figure 4E: Add hypermutator mut sigs heatmap
#1285
jharenza
closed
2 years ago
12
Remove fig4-telomerase-activities.R script
#1284
sjspielman
closed
2 years ago
1
Figs5 panels
#1283
sjspielman
closed
2 years ago
1
Complete manuscript figures
#1282
sjspielman
closed
2 years ago
4
Create Panels for Figure S5
#1281
jharenza
closed
2 years ago
2
TP53 and telomerase panels for figure 4
#1280
sjspielman
closed
2 years ago
12
Figure S2 panels
#1279
sjspielman
closed
2 years ago
9
Deprecate tgca-capture-kit-investigation module
#1278
sjspielman
closed
2 years ago
0
CI failing at TCGA Capture Kit Investigation
#1277
sjspielman
closed
2 years ago
4
Update survival tp53/telomerase analysis
#1276
jharenza
closed
2 years ago
10
Add tp53 figure and associated figure organizational changes
#1275
sjspielman
closed
2 years ago
11
Removed vignette argument from sigfit installation
#1274
sjspielman
closed
2 years ago
2
Remove sigfit vignette install from Dockerfile
#1273
sjspielman
closed
2 years ago
1
Manuscript figures for telomerase
#1272
sjspielman
closed
2 years ago
2
Rearrange manuscript figures
#1271
sjspielman
closed
2 years ago
2
Supplementary figure PDF organization
#1270
sjspielman
closed
2 years ago
0
Update table generation notebook and excel files
#1269
sjspielman
closed
2 years ago
3
Update mutational signatures supplementary tables
#1268
sjspielman
closed
2 years ago
1
Add organization to the supplementary figure PDF directory
#1267
sjspielman
closed
2 years ago
1
Count alterations represented in oncoprint on a per cancer group basis
#1266
jaclyn-taroni
closed
2 years ago
3
supp tables modified
#1265
runjin326
closed
2 years ago
1
Survival analysis for immune cells added
#1264
runjin326
closed
2 years ago
22
Issue 1248
#1263
sjspielman
closed
2 years ago
2
Update release-notes.md
#1262
jharenza
closed
2 years ago
1
Update generate_figures.sh script in order of figures
#1261
sjspielman
closed
2 years ago
1
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