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CambridgeCentreForProteomics
/
camprotR
https://cambridgecentreforproteomics.github.io/camprotR/
MIT License
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Sanity check input fasta with add_PTM_positions
#54
TomSmithCGAT
opened
1 year ago
0
speeds up add_peptide_positions by dropping Biostrings::match
#53
TomSmithCGAT
closed
1 week ago
1
Fix devtools test failures
#52
csdaw
closed
1 year ago
0
Ts enable triple silac
#51
TomSmithCGAT
closed
1 year ago
3
Precompute vignettes
#50
csdaw
opened
1 year ago
0
Adds option to include more grouping columns for silac_psm_seq_int.R
#49
TomSmithCGAT
closed
2 years ago
0
Replace `dep_results` dataset
#48
csdaw
opened
2 years ago
3
Remove my old functions
#47
csdaw
closed
2 years ago
0
updates LFQ vignette for re-exported data
#46
TomSmithCGAT
closed
2 years ago
0
Remove my old functions
#45
csdaw
closed
2 years ago
1
Fix function autolinks in vignettes
#44
csdaw
opened
2 years ago
0
Adjust `restrict_features_per_protein()`
#43
csdaw
opened
2 years ago
0
Ts add lfq vignette
#42
TomSmithCGAT
closed
2 years ago
2
debugs estimate_go_overrep
#41
TomSmithCGAT
closed
2 years ago
1
Make `estimate_incorporation()` more flexible
#40
csdaw
closed
2 years ago
0
Make `get_ancestor_go()` messages/warnings more informative
#39
csdaw
opened
2 years ago
0
updates silac_psm_seq_int to more informative output
#38
TomSmithCGAT
closed
2 years ago
0
Ts add vignettes
#37
TomSmithCGAT
closed
2 years ago
7
Sequence columns
#36
TomSmithCGAT
opened
2 years ago
0
Incompatibility issues with add_peptide_positions()
#35
JosieAC
opened
2 years ago
0
Fix `estimate_incorporation()`
#34
csdaw
closed
2 years ago
0
Change cRAP accession list to cRAP FASTA file
#33
JosieAC
opened
2 years ago
0
Adapt parse_features() to include protein-level data.
#32
JosieAC
opened
2 years ago
0
Revamp tests
#31
csdaw
closed
2 years ago
2
Revert "switches to automatic deployment of website"
#30
TomSmithCGAT
closed
2 years ago
0
switches to automatic deployment of website
#29
TomSmithCGAT
closed
2 years ago
0
Add MSnSet vignette
#28
csdaw
closed
2 years ago
3
Add some examples
#27
csdaw
closed
2 years ago
0
Adds a website
#26
TomSmithCGAT
closed
2 years ago
0
Avoids error in remove_redundant_go when GO term has no ontology
#25
TomSmithCGAT
closed
2 years ago
4
Add more GO functions
#24
csdaw
closed
2 years ago
0
'Fix' failing tests
#23
csdaw
closed
3 years ago
0
Tweaks to parse_features
#22
csdaw
opened
3 years ago
1
Download cRAP
#21
csdaw
closed
3 years ago
8
{ts} test test test
#20
csdaw
closed
3 years ago
3
Tests: to do
#19
csdaw
closed
3 years ago
5
Drop travis
#18
csdaw
closed
3 years ago
9
remove deps
#17
csdaw
closed
3 years ago
2
Move from Travis to GitHub actions
#16
csdaw
closed
3 years ago
2
Vignettes
#15
TomSmithCGAT
opened
3 years ago
3
{ts} update average sn
#14
TomSmithCGAT
closed
3 years ago
3
gobbles up some low-hanging testing fruit
#13
TomSmithCGAT
closed
3 years ago
3
{ts} add vignette tmt qc
#12
TomSmithCGAT
closed
3 years ago
1
{ts} add psm filter reg tests
#11
TomSmithCGAT
closed
3 years ago
0
{ts} add psm filter reg tests sb1
#10
TomSmithCGAT
closed
3 years ago
0
{ts} ptm
#9
TomSmithCGAT
closed
3 years ago
0
Import MSnbase
#8
TomSmithCGAT
closed
3 years ago
1
{ts} silac
#7
TomSmithCGAT
closed
3 years ago
2
{ts} lfq
#6
TomSmithCGAT
closed
3 years ago
1
{ts} add notch plot
#5
TomSmithCGAT
closed
3 years ago
2
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