NVIDIA-Genomics-Research GenomeWorks issues

NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis

https://clara-parabricks.github.io/GenomeWorks/

Apache License 2.0

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issues

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#include "seqio.h" //TODO add this to 3rdparty

#670 CTForGitHub opened 2 weeks ago
0
Bump tqdm from 4.31.1 to 4.66.3 in /pygenomeworks

#669 dependabot[bot] opened 2 months ago
0
GenomeWorks fails to compile with CUDA 12

#668 quim0 opened 10 months ago
1
Bump numpy from 1.16.3 to 1.22.0 in /pygenomeworks

#667 dependabot[bot] opened 2 years ago
1
[cudapoa] Kernel error

#666 rvaser opened 2 years ago
0
[cudamapper] compared to minimap2

#665 wzboy1984 opened 2 years ago
0
cudamapper terminates while doing an all-vs-all mapping

#664 alanorth opened 2 years ago
0
Build fails with gcc 7 and 8

#663 tristanpwdennis closed 2 years ago
1
Floating Point Exception in Racon

#662 schorlton opened 2 years ago
0
Add missing <limits> for GCC 11

#661 pb-dseifert closed 2 years ago
5
Buils fails with gcc 9.3

#660 dominik-handler closed 2 years ago
4
[cudaaligner] Fixed bug in memory requirement estimation and misc improvements

#659 ahehn-nv closed 2 years ago
0
[common] Added debug output to preallocated allocator

#658 ahehn-nv closed 2 years ago
0
[cudaaligner] myers_gpu uses workspace per block now

#657 ahehn-nv closed 2 years ago
0
cudamapper error using bam output

#656 RichardCorbett opened 3 years ago
2
How to fix cudaErrorInvalidDeviceFunction exception for cudamapper

#655 wzboy1984 closed 3 years ago
1
[sdk] removed limits.cuh in favor of libcu++'s limits

#654 ahehn-nv opened 3 years ago
0
[sdk] remove --expt-relaxed-constexpr flags

#653 ahehn-nv closed 3 years ago
0
Update tqdm version

#652 ohadmo closed 3 years ago
0
Fix calendar versioning

#651 ohadmo closed 3 years ago
0
Update requirements for cupy and h5py

#650 ohadmo closed 3 years ago
0
Update requirements

#649 EpiSlim closed 3 years ago
0
[pygenomeworks] logger chatter.

#648 iiSeymour opened 3 years ago
2
[pygenomeworks] pinned dependencies.

#647 iiSeymour closed 3 years ago
1
[cudaaligner] Fix: set correct device in create_aligner

#646 ahehn-nv closed 3 years ago
0
[cudaaligner] banded Myers: allow individual bandwidth

#645 ahehn-nv closed 3 years ago
0
Specified branch for libcudacxx in .gitmodules

#644 EpiSlim closed 3 years ago
0
[cudaaligner] Banded Myers: moved Alignment object creation to sync_a…

#643 ahehn-nv closed 3 years ago
0
[cudaaligner] add device results interface

#642 ahehn-nv closed 3 years ago
0
[cudaaligner] Use RLE for alignment

#641 ahehn-nv closed 3 years ago
1
[sdk][cudaaligner] Misc. improvements

#640 ahehn-nv closed 3 years ago
0
[DO NOT MERGE] Testing CI [skip ci]

#639 raydouglass closed 3 years ago
2
Ahehn/warning fixes

#638 ahehn-nv closed 3 years ago
2
format.h is broken and breaks CUDA compile

#637 cement-head opened 3 years ago
3
[cudamapper] Ignore -Wunused-parameter for Thrust

#636 mimaric closed 3 years ago
2
[Release v2021.02.0] Merge release v2021.02.0 branch into Master

#635 ohadmo closed 3 years ago
0
@GW_USE_DEVICE_ALLOCATOR_FILE@

#634 pb-cdunn opened 3 years ago
3
Promote dev version to 2021.06.0

#633 ohadmo opened 3 years ago
0
[cudaaligner] Corrected the memory requirements of Hirschberg-Myers

#632 ahehn-nv closed 3 years ago
0
[cudaaligner] Fixed bug in reset_max_bandwidth()

#631 ahehn-nv closed 3 years ago
1
[cudaaligner] Disabled caching device-allocator may trigger OOM in cudaaligner

#630 ahehn-nv opened 3 years ago
0
[cudaaligner] Introduce FixedBandAligner interface

#629 ahehn-nv closed 3 years ago
0
[cudaaligner] Add aligner.reset_bandwidth(int32_t) to banded Myers aligner

#628 ahehn-nv closed 3 years ago
4
Support calendar versioning

#627 ohadmo closed 3 years ago
1
[cudaaaligner] Improved task scheduling for Banded Myers

#626 ahehn-nv closed 3 years ago
3
Creating separate files for testing data in cudaaligner (issue #505)

#625 EpiSlim opened 3 years ago
0
[cudaaligner] Remove limitation of launching max 65535 alignments at once.

#624 ahehn-nv closed 3 years ago
0
[cudaaligner] fixed a warning about double->float conversion

#623 ahehn-nv closed 3 years ago
0
Add missing error checks to avoid silent errors

#622 ahehn-nv closed 3 years ago
1
replaced cudaMemcpy with device_copy_n in cudaaligner

#621 EpiSlim closed 3 years ago
1