A collection of papers on comparison of long and/or short read sequencing technologies (and data generated from the platforms). | Sequencing | Technologies | For | The | Win |
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2024, 2023 | 2022, 2021 | 2020 | 2019 | 2018 |
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Title: Genome-wide profiling of highly similar paralogous genes using HiFi sequencing
Title: A graph clustering algorithm for detection and genotyping of structural variants from long reads
Description: Sequencing of zooplankton samples to recover molecular operational taxonomic units (MOTUs). At the sample-level, Illumina metabarcoding recovered more MOTUs than nanopore.
Platforms: Illumina MiSeq and ONT's minION (R10.3 chemistry)
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Title: Performance analysis of conventional and AI-based variant callers using short and long reads
Platforms: Illumina HiSeq2500
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Description: Assessment of assembly algorithms for the analysis of viromes (mock community of 15 bacteriophage genomes), and assessment of error rates across different platforms.
Platforms: Illumina MiSeq (NexteraXT library prep kit), minION (library prep by SQK-LSK109), and PacBio Sequel.
Description: Isoform analysis of mouse data via sequencing cDNA of reverse transcription events.
Platforms: PacBio Sequel II, and ONT PromethION
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Description: Comparative analysis of two clinical samples
Platforms: HiSeq 1500 (2 × 101 bp) and, ONT's GridION using R9.4.1 flowcell (ligation sequencing kit SQK-LSK109)
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Description: Analysis of 50 human endogenous retroviruses (HERVs) short-read whole-genome sequences, "matching long and short read data, and simulated short-read data."
Platforms: Illumina HiSeq 2000 and 2500, and PacBio Sequel
Contribute by submitting pull requests, or posting suggestions as issues. Thank you.