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PalMuc
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TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
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issue of onlyAnn mode
#58
huawen-poppy
opened
7 months ago
0
Can I inform the direction of sequencing?
#57
katiacapel
opened
1 year ago
1
Fail to download uniprot_metazoa_33208.fasta
#56
dppss90008
closed
1 year ago
4
line 8: insilico_read_normalization.pl: command not found
#55
Rahimlou
opened
1 year ago
5
Error executing process > 'transdecoder_predict
#54
AlexGaithuma
closed
1 year ago
1
TransPi on HPC failing to pull singularity image
#53
claumer
opened
1 year ago
3
Uniprot Metazoan database not downloaded due to changes in UniProt REST API
#52
IdoBar
opened
2 years ago
2
Missing transpi_env.yml
#51
roscampbell
opened
2 years ago
2
Trinotate preparation step in Precheck script silently fails with missing Perl module
#50
IdoBar
opened
2 years ago
0
Operator `into` has been deprecated -- it's not available in DSL2 syntax
#49
SowmyaPulapet
opened
2 years ago
0
problems running full analysis (--all option) and evigene's script
#48
BravoScarleth
opened
2 years ago
0
Process requirement exceed available memory
#47
1riyu
opened
2 years ago
0
Unexpected run time, Trinity/salmon
#46
peterdfields
opened
2 years ago
1
Process fastp (AC422_S687_S14_L001_R) terminated with an error exit status (1)
#45
1riyu
closed
2 years ago
0
Signal P Compatibility Error?
#44
andypaige772
opened
2 years ago
2
Transdecoder cannot be found
#43
dbscjjm
opened
2 years ago
0
Process `fastp (Ccelos_S1_L001)` terminated with an error exit status (127)
#42
RNiloP
closed
2 years ago
1
Error Running Full Analysis: Process `fastp (1_R1)` terminated with an error exit status (255)
#41
andypaige772
opened
2 years ago
5
KEGG warn message
#40
vruggieri
opened
2 years ago
3
Error in rRNAfilter and sortmerna
#39
dpaz-corals
opened
2 years ago
0
Error: No module named 'busco'
#38
gabrielnsil
closed
8 months ago
4
precheck not installing software
#37
hcliedtke
closed
2 years ago
2
When using singularity, busco step fails when it cannot find database
#36
laninsky
opened
2 years ago
2
rnaspades step dies with "AttributeError: module 'collections' has no attribute 'Hashable'"
#35
laninsky
closed
2 years ago
4
rnaquast conda error
#34
kathrinannaotte
opened
2 years ago
4
Single-end reads
#33
kathrinannaotte
opened
2 years ago
3
Error in process busco4_dist
#32
ghost
opened
2 years ago
3
Certificate check in BUSCO not working
#31
rivera10
closed
2 years ago
0
Error in process Trinotate.
#30
ghost
opened
2 years ago
4
Dev
#29
rivera10
closed
2 years ago
0
Installation Issue (file yml?)
#28
francesconardi
closed
2 years ago
12
Multiple taxid for database download
#27
rivera10
opened
2 years ago
0
github update 4 days ago of TransPi.nf
#26
dbajpp0
opened
2 years ago
1
error at TransPi_Report_Ind.Rmd
#25
dbajpp0
opened
2 years ago
1
Using several databases
#24
dbajpp0
closed
2 years ago
1
Running onlyEvi
#23
andypaige772
opened
3 years ago
1
error in Trinity
#22
dbajpp0
closed
2 years ago
4
TransPi Single End Reads?
#21
andypaige772
closed
2 years ago
1
Java issue
#20
brittonstrickland
closed
3 years ago
5
Problem with --onlyAnn ?
#19
pmoulos
opened
3 years ago
3
Unknown error
#18
kazumaxneo
closed
3 years ago
3
Mulled container libbz2.so.1 shared libraries
#17
rivera10
closed
3 years ago
1
PR for TransPi v1.1.0
#16
rivera10
closed
3 years ago
0
no perl in cointainer
#15
rsuchecki
closed
3 years ago
5
precheck issues
#14
rsuchecki
closed
3 years ago
3
Error executing process > 'normalize_reads', RAM required 150GB
#13
jcoludar
closed
3 years ago
6
Issue finding busco when running Transpi with slurm / sbatch
#12
infinity01
closed
3 years ago
24
Combine processes that are shared between various analysis mode
#11
rivera10
closed
3 years ago
1
User DB option
#10
rivera10
closed
3 years ago
1
Error related to BUSCO
#9
gushiro
closed
3 years ago
2
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