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PathwayCommons
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cpath2
Biological pathway data integration and access platform (Pathway Commons)
http://www.pathwaycommons.org/pc2/
MIT License
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Wikipathways data revealed a bug in the Merger
#222
IgorRodchenkov
closed
8 years ago
1
Inconsistent behavior: a 'get' pathway query may fail or return the result.
#221
IgorRodchenkov
closed
8 years ago
1
SIF export issue (KRAS - MTOR, AKT3)
#220
IgorRodchenkov
closed
8 years ago
1
A neigborhood query throws exception
#219
IgorRodchenkov
closed
9 years ago
7
a INOH Cleaner
#218
IgorRodchenkov
closed
9 years ago
5
a NetPath Cleaner
#217
IgorRodchenkov
closed
9 years ago
0
PC2 v7: some Xrefs lack db or id property value(s).
#216
IgorRodchenkov
closed
9 years ago
0
Truncated pathway names in extended SIF (mostly KEGG pathways)
#215
IgorRodchenkov
closed
9 years ago
0
Some logo images are broken on the /datasources page
#214
IgorRodchenkov
closed
9 years ago
1
Assess log web api: add time interval option (e.g., year, month, day)
#213
IgorRodchenkov
closed
9 years ago
1
create-downloads: can we split BioPAX by organism, data source, etc. faster?
#212
IgorRodchenkov
closed
8 years ago
1
create-downloads: get SIF from EXTENDED_SIF
#211
IgorRodchenkov
closed
9 years ago
0
Log stats page does not load: Flash crashes (or becomes slow)
#210
IgorRodchenkov
closed
9 years ago
0
Getting the number of unique IP addresses by each day (cumulative)
#209
IgorRodchenkov
closed
9 years ago
1
PC web API URL
#208
IgorRodchenkov
closed
6 years ago
1
Some PC2 URI (rdf:ID) are invalid (the local part is not a valid NCName).
#207
IgorRodchenkov
closed
9 years ago
1
Downloads Page Slow to Load
#206
cannin
closed
9 years ago
3
KEGG pathways share the same unification xref; one pathway has components, the other has none; both seem to be the same Thing
#205
GoogleCodeExporter
closed
9 years ago
2
stepProcess property range errors when /get query is used
#204
GoogleCodeExporter
closed
9 years ago
1
Filter does not quite work: no results found using "Database of Interacting Proteins " as 'datasource' filter value
#203
GoogleCodeExporter
closed
9 years ago
1
SIF querying support in cPath2 and Paxtools
#202
GoogleCodeExporter
closed
5 years ago
5
The counts of different type entities are incorrect
#201
GoogleCodeExporter
closed
9 years ago
1
PID: NCI curated pathway data, BioPAX L3 issues
#200
GoogleCodeExporter
closed
9 years ago
4
Cleanup PC2 access log db
#199
GoogleCodeExporter
closed
9 years ago
3
Graph queries: no MolecularInteractions, dangling/duplicate proteins
#198
GoogleCodeExporter
closed
9 years ago
14
Clean up http://www.pathwaycommons.org/pc2/datasources
#197
GoogleCodeExporter
closed
9 years ago
3
Search hit size=1 instead of 0
#196
GoogleCodeExporter
closed
9 years ago
1
A specific search - hits order issue
#195
GoogleCodeExporter
closed
9 years ago
3
top_pathways query using a filter can result in error 500.
#194
GoogleCodeExporter
closed
9 years ago
2
BIND: elements <organism> have human, homo sapiens names but taxonomy ID is not 9606
#193
GoogleCodeExporter
closed
9 years ago
6
Non-equivalent BioPAX objects in different files have the same absolute URI
#192
GoogleCodeExporter
closed
9 years ago
1
An example query returns "no results" after adding format=gsea despite there are proteins in the sub-model
#191
GoogleCodeExporter
closed
9 years ago
1
web robots can access downloads and example links
#190
GoogleCodeExporter
closed
9 years ago
2
Extra unwanted element from a query on PC2v5
#189
GoogleCodeExporter
closed
9 years ago
4
PCViz: Collect view/usage stats for data source specific edges/information
#188
GoogleCodeExporter
closed
9 years ago
1
Chibe displays disconnected ubique molecule reactions after graph search on PC
#187
GoogleCodeExporter
closed
5 years ago
2
There're probably many duplicate Protein objects (from PSIMI conv?)
#186
GoogleCodeExporter
closed
9 years ago
2
filter by datasource in graph queries is case-sensitive
#185
GoogleCodeExporter
closed
9 years ago
6
A separate owl file for reaction-level data
#184
GoogleCodeExporter
closed
9 years ago
1
Search for complexes and interactions for a given participant set
#183
GoogleCodeExporter
closed
5 years ago
1
Store entity counts in a search hit
#182
GoogleCodeExporter
closed
9 years ago
1
try using asynchronous web controllers
#181
GoogleCodeExporter
closed
5 years ago
1
Downloads link on the main web site
#180
GoogleCodeExporter
closed
9 years ago
6
new query - by pathway URI
#179
GoogleCodeExporter
closed
9 years ago
1
Failed to execute goal
#178
GoogleCodeExporter
closed
9 years ago
3
Rename filtering operations
#177
GoogleCodeExporter
closed
9 years ago
3
PCViz: cannot download/print a network as Image (PNG)
#176
GoogleCodeExporter
closed
9 years ago
3
Providers use 'HGNC' both for the IDs and symbols in xrefs
#175
GoogleCodeExporter
closed
9 years ago
1
HumanCyc: direction
#174
GoogleCodeExporter
closed
5 years ago
4
PANTHER Pathway - no Controls explicitely included (e.g., in pathwayComponet), but some reactions are in fact catalysed
#173
GoogleCodeExporter
closed
9 years ago
2
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