Teichlab cellphonedb issues

Teichlab / cellphonedb

MIT License

338 stars 105 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Fix requirements

#284 prete closed 3 years ago
1
Counts values are not decimal values. Incorrect file format !

#283 Portulaca666 closed 3 years ago
2
statistical_analysis and analysis frozen on _counts_validations

#282 edwardkim1 opened 3 years ago
10
Update requirement of pandas and numpy

#281 adrianodemarino closed 3 years ago
1
InvalidIndexError upon building results after successful statistical analysis

#280 ColeKeenum closed 3 years ago
10
Input data Question

#279 jefferyUstc closed 3 years ago
1
Unexpected behaviors with plot dot_plot function.

#278 martin-jeremy opened 3 years ago
0
Cannot run the test data

#277 shokohirosue closed 3 years ago
3
Creating an empty dataframe

#276 simon-spier0 closed 3 years ago
1
minor speed bump attempt #2

#275 zktuong closed 3 years ago
1
small speed increase

#274 zktuong closed 3 years ago
0
'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte

#273 rachel662 opened 3 years ago
16
Are counts filtered?

#272 suhasaii closed 2 years ago
3
Remove cython requirement

#271 prete closed 3 years ago
0
How to use environment.yaml install CellphoneDB environment in conda

#270 yuyzw closed 3 years ago
1
Missing project documentation on PyPI

#269 jma1991 closed 3 years ago
1
Custom interactions are reversed by the database creation process

#268 jmrussell opened 3 years ago
1
How to add some proteins and interactions

#267 martin-jeremy closed 3 years ago
1
"statistical_analysis" won't run on the example data, but "analysis" will. Error = AttributeError: type object 'object' has no attribute 'dtype'

#266 maktaylo closed 3 years ago
6
ligand_receptor or receptor_ligand?

#265 chrsyl closed 3 years ago
1
Allow .h5ad and .h5 as input, compatibility with pandas >= 1.2, python=3.8

#264 zktuong closed 3 years ago
0
Indexing issue

#263 amr15 closed 3 years ago
1
sqlalchemy.exc.IntegrityError: (sqlite3.IntegrityError) UNIQUE constraint failed: interaction_table.id_cp_interaction

#262 ntran95 opened 3 years ago
4
pvals

#261 chrsyl closed 3 years ago
2
ValueError: Plan shapes are not aligned

#260 jmrussell closed 3 years ago
4
statistical_analysis does not work

#259 nagendraKU closed 3 years ago
6
Error: no such option: --counts-data

#258 10adavis opened 3 years ago
5
apply cellphonedb to data obtained from different single-cell RNA-seq platforms

#257 showteeth opened 3 years ago
1
sqlite3.OperationalError: database is locked

#256 wtj505531480 closed 3 years ago
1
Update plot_dot_by_column_name.R

#255 mief opened 3 years ago
0
significant means file - duplicate interaction id

#254 onahman opened 3 years ago
2
TypeError: cannot do label indexing on <class 'pandas.core.indexes.base.Index'> with these indexers [nan] of <class 'float'>

#253 mcap91 closed 3 years ago
1
Can't activate the virtual environment in Windows 10

#252 rachel662 closed 3 years ago
1
Missing interactions

#251 Adina-ballaban opened 3 years ago
1
Access to the permutated number table

#250 yctsan opened 3 years ago
0
Installation issues Windows 10 Python 3.7

#249 tgtan closed 3 years ago
1
install error

#248 YinCY123 closed 3 years ago
2
ModuleNotFoundError: No module named 'sklearn.cluster.k_means_'

#247 dfermin closed 3 years ago
3
Heatmap plot ordering - sample comparison

#246 ms3389 opened 3 years ago
1
Windows Installation Error

#245 akshar371 opened 3 years ago
5
Percentage of Expression

#244 angelussong opened 3 years ago
3
Do comparison using "celltype_origin" format in "meta.txt" file

#243 MingwuDuan opened 3 years ago
0
Do we need filter the gene expression firstly before running cellphoneDB?

#242 panxiaoguang opened 3 years ago
0
Do you have to normalise your counts before running cellphoneDB?

#241 rachel662 closed 3 years ago
1
problems about install

#240 Portulaca666 closed 3 years ago
2
expected runtime

#239 rlittman16 opened 3 years ago
1
NA

#238 Jora1991 closed 3 years ago
0
problems with installing on terminal when running setup.py install pandas

#237 rachel662 closed 3 years ago
5
Confusion about rank value

#236 songmingl opened 3 years ago
0
User generate database fails if file extension is .txt instead of .csv

#235 racng closed 3 years ago
1

Previous Next