Teichlab cellphonedb issues

Teichlab / cellphonedb

MIT License

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issues

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How to create user's own database with a new interaction list file??

#234 Sara0201Tao opened 3 years ago
2
Unexpected interaction HLADPB1-NRG1 (also not found in the cited source database)

#233 MaxKman closed 3 years ago
2
removing strict version requrements for packages

#232 stela2502 closed 3 years ago
2
Building wheels for collected packages: pandas fails

#231 stela2502 closed 3 years ago
4
How to interpret negative log2 means in dot plot

#230 hemadelon opened 3 years ago
2
cellphonedb plot heatmap_plot

#229 dianadom opened 3 years ago
10
Designation of clusters that express ligand vs. receptor

#228 14lwt1 closed 3 years ago
1
--subsampling-log parameter for CPM normalized data

#227 J-Keding opened 3 years ago
0
Coding error in line 48 of cellphonedb/src/core/database/sqlalchemy_repository/InteractionRepository.py

#226 cartof closed 3 years ago
1
Python 3.9 breaks pandas-0.23.4 dependency during cellphonedb installation

#225 boothbyi closed 3 years ago
9
Incompatible with Python 3.5

#224 levlitichev closed 3 years ago
1
A bug in the dot_plot function

#223 skpalan closed 3 years ago
0
Issue with running the code

#222 dianadom closed 3 years ago
4
unable to upload scRNA seq data at CellPhonedB website

#221 Sumithrasank opened 3 years ago
1
About the Run time and GPU

#220 Yunxia-wang opened 3 years ago
1
undefined columns selected when running heatmap plotting

#219 Sa753 opened 3 years ago
7
Create fixOrder.py

#218 yewero opened 3 years ago
0
How to use my own database only?

#217 yewero closed 3 years ago
0
A duplicated interaction term

#216 yewero opened 3 years ago
0
Update README.md

#215 mief closed 3 years ago
1
About the communication direction

#214 yewero closed 3 years ago
4
Cellphonedb for integrated datasets

#213 bapoorva closed 3 years ago
2
Develop

#212 mvento closed 3 years ago
0
Hi. I get the same error message when I try to run the dotplot or heatmap functions. As a consequence, I can't find the plot neither in the output directory nor anywhere else. Even though the plot pops up briefly...

#211 JustMoveOnnn closed 3 years ago
2
why cellphonedb still enriches some interactions even this cluster cells don't expression genes of receptor/ligand

#210 hua1991 opened 3 years ago
1
Output result: receiving and sending cell

#209 m21camby closed 3 years ago
2
API for cellphonedb ?

#208 giovp closed 3 years ago
7
How to use cellphonedb to annotate genes with interactions?

#207 racng closed 3 years ago
1
pval[pval==0] = 0.0009 (plot_dot_by_column_name.R)

#206 peerkarmaus closed 3 years ago
1
KeyError: 'ENSG00000182985'

#205 CHENGHAO-WANG closed 3 years ago
1
Update README.md

#204 eba28 closed 3 years ago
0
Issue with Invalid Counts Data

#203 SaskiaFreytag closed 3 years ago
13
Issue with installation

#202 hemadelon closed 3 years ago
1
Result is empty Mouse dataset

#201 jamrute closed 4 years ago
0
By default, How many Threads started in the running?

#200 jefferyUstc closed 3 years ago
1
Need help retrieving meta file from Seurat object

#199 xihuiyin closed 3 years ago
1
Question about plotting

#198 evenDDDDD closed 3 years ago
4
Q: Calculation of mean values of interacting partners when partner is complex AND members' minimum value is zero

#197 mjgomezv closed 3 years ago
1
Null distribution

#196 huangyh09 closed 3 years ago
1
Is the calculated average expression comparable between separate runs of cellphonedb?

#195 rlorenzc closed 3 years ago
1
How accurate is the human database analysis of mouse data？

#194 skydashan closed 3 years ago
1
Upgrade to pandas 0.25, fixes very long pandas build time for Python3.8 users

#193 gokceneraslan closed 3 years ago
1
question for results file

#192 MMriran closed 3 years ago
3
Error: SyntaxError

#191 weiiioyo closed 4 years ago
1
Error: no such option: --counts-data

#190 KhushiVirah closed 3 years ago
1
How to use cellphoneDB

#189 rachel662 closed 3 years ago
1
CellPhoneDB website overloaded

#188 ssch313 closed 3 years ago
0
Number of interactions in count_network.tsv

#187 TobiTekath closed 3 years ago
2
normal mode vs statistical analysis mode

#186 yanwengong closed 3 years ago
2
Is there a example of your_custom_interaction_file.csv?

#185 nkm47 closed 3 years ago
1

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