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aertslab
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SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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Difference results between R SCENIC and pySCENIC
#213
ayumatsubo
closed
3 years ago
0
runSCENIC_4_aucell_binarize ERROR
#211
ryrl970311
opened
3 years ago
2
ERROR in runSCENIC_2_createRegulons
#210
ryrl970311
opened
3 years ago
2
runSCENIC_2_createRegulons error
#209
ivonyao
closed
2 years ago
2
read in the mm10 specific feather files
#208
sylestiel
closed
2 years ago
2
Error message when running the first tutorial notebook
#207
dyXDDD
closed
2 years ago
2
Generation of Gene Expression Matrix for Scenic when starting with Cell Ranger
#206
sylestiel
closed
2 years ago
1
Error in if (common.len == 1L) unlist(x, recursive = FALSE) else if (common.len > :
#205
Zymaniswenzai
opened
3 years ago
0
RcisTarget dataset download error
#204
dxw5099
closed
3 years ago
0
Error in runSCENIC_2_createRegulons()
#203
SarahMyoblast
opened
3 years ago
6
Comparing RAS scores between independent runs
#202
jakalssj3
closed
2 years ago
1
What is the function of "top10perTarget" or "top50perTarget" in runSCENIC_2_createRegulons?
#201
smilesw
closed
2 years ago
0
how to change genome version
#199
fengyun198503
closed
2 years ago
1
runSCENIC_4 thresholds not selected for AUCell::AUCell_plotTSNE
#198
AAA-3
opened
3 years ago
1
.addSignificantGenes only include a subset of genes/regions included in the whole database.
#197
AAA-3
closed
3 years ago
0
runSCENIC_4_aucell_binarize error
#196
morganee261
opened
3 years ago
7
runSCENIC_2_creatRegulons Error
#195
ryrl970311
opened
3 years ago
1
RSS Plot not selecting the dseired data (out of bounds error)
#194
AAA-3
closed
3 years ago
2
Visualizing SCENIC Weight Matrix
#193
husain223
closed
2 years ago
0
Error runSCENIC_2_createRegulons
#192
yutongo
closed
3 years ago
1
runCorrelation matrix error
#191
AAA-3
closed
3 years ago
2
Error in runSCENIC_2
#190
strawberry789
opened
3 years ago
0
AssertionError: Signatures dataframe is empty!
#189
JiaweiDai-create
opened
3 years ago
2
Inferring the regulons and calculating the activity in sperate cell cluster/type
#188
etbuface
opened
3 years ago
0
Could not find function "plotTsne_rgb"
#187
AAA-3
closed
3 years ago
4
Error with AUCell_plotTSNE
#186
AAA-3
closed
3 years ago
1
Loading Feather Datasets from Tutorial
#185
AAA-3
closed
3 years ago
5
The parameter 'minPerc' in binarized version
#184
XYZuo
closed
2 years ago
0
Registered $3 methods overwritten by arrow
#183
lxwang326
opened
3 years ago
0
How to run SCENIC for chimp data?
#182
weishwu
closed
2 years ago
1
run_SCENIC_4
#181
morganee261
opened
3 years ago
0
rm feather package
#180
tropfenameimer
closed
3 years ago
0
Issue Running runSCENIC_2_createRegulons() on Windows OS
#179
Aaron-O-Gonzalez
opened
3 years ago
2
register error in runSCENIC_2_createRegulons
#178
hsd676
opened
3 years ago
3
How to recover from cache when finishing running "runGenie3"
#177
wu-yc
opened
3 years ago
0
Cannot open temporary file error
#176
weishwu
closed
3 years ago
3
Error message during running runSCENIC_3_scoreCells()
#175
wulc21
opened
3 years ago
2
0 genes available in RcisTarget database
#174
anchormok
opened
3 years ago
4
File 'int/1.4_GENIE3_linkList.Rds' does not exist
#173
EAC-T
closed
2 years ago
1
R aborted at the first step
#172
linhch5
closed
2 years ago
0
How to transform a Seurat.object directly into SCENIC.object(scenicOptions)
#171
grimwoo
closed
3 years ago
1
How to understand that activity score is not matching well with gene expression?
#170
Dongxu-Zheng
closed
2 years ago
0
tuple is not allowed for map key
#169
yiyelinfeng
closed
3 years ago
1
Problem with initializeScenic()
#168
Shaiov
closed
2 years ago
25
How to get the file tSNE_AUC_50pcs_50perpl.Rds and 3.4_regulonAUC.Rds
#167
JingleW
opened
4 years ago
1
dotheatmap.R not found when plotRSS(rss)
#166
zezhuo
closed
2 years ago
8
runSCENIC_3_scoreCells errors: Error in plot.new() and Error in .Call.graphics(C_gridDirty)
#165
pgugger
opened
4 years ago
4
How to use pyscenic output draw RSS result Binary heatmap
#164
siqi-zZ
closed
4 years ago
1
RcisTarget databases not found in initializeScenic()
#163
dakotakatz
opened
4 years ago
6
calculate TF using the differential expression genes
#162
wtj505531480
closed
4 years ago
2
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