issues
search
carpentries-incubator
/
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
https://carpentries-incubator.github.io/bioc-rnaseq
Other
18
stars
26
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Test pr
#110
almahmoud
closed
2 days ago
1
Add > PCs to iSEE example OR add glimmaMDS
#109
jdrnevich
opened
3 days ago
0
Should we switch to TidySummarizedExperiment?
#108
jdrnevich
opened
4 days ago
0
Put subheadings in Episode 1
#107
jdrnevich
opened
4 days ago
0
Replace UCSC with NCBI
#106
jdrnevich
opened
4 days ago
0
Add verification step for raw GEO data vs. prepared CSV
#105
ttriche
opened
4 days ago
2
Change color scheme in exploratory analysis (addressing #90)
#104
csoneson
opened
1 month ago
1
Update 24 packages
#103
carpentries-bot
closed
4 months ago
1
Change lifecycle stage to beta
#102
csoneson
closed
5 months ago
1
Update life cycle stage?
#101
tobyhodges
closed
5 months ago
1
Update 35 packages
#100
carpentries-bot
closed
5 months ago
1
Update 44 packages
#99
carpentries-bot
closed
6 months ago
1
Add links to bioc-project
#98
lgatto
opened
8 months ago
0
Update 48 packages
#97
carpentries-bot
closed
8 months ago
1
Fix links in contribution guide
#96
csoneson
closed
9 months ago
1
Mention volcano plots
#95
csoneson
opened
9 months ago
0
Add workflow diagram
#94
csoneson
opened
9 months ago
0
Updates following the EuroBioC workshop
#93
csoneson
closed
9 months ago
1
Add more exercises to gene set analysis episode
#92
csoneson
opened
9 months ago
0
Add iSEE-related challenges
#91
csoneson
opened
9 months ago
0
Change color palette in barplot
#90
csoneson
opened
9 months ago
0
Save assembled SE object in output/ rather than in data/
#89
csoneson
opened
9 months ago
0
Add intro to GRanges, or create an unranged SE
#88
csoneson
opened
9 months ago
0
Add links to public FastQC reports
#87
csoneson
opened
9 months ago
0
Fix subsetting challenge
#86
csoneson
closed
10 months ago
1
Update Workflows to Version 0.13.0
#85
carpentries-bot
closed
10 months ago
1
Add some more things to the object before calling iSEE
#84
csoneson
closed
10 months ago
1
Data description + minor edits
#83
csoneson
closed
10 months ago
1
Added practice problems to explore the SummarizedExperiment object in…
#82
almeidasilvaf
closed
10 months ago
1
add challenges to expl data analysis
#81
almutlue
closed
10 months ago
1
Add chunk labels
#80
csoneson
closed
10 months ago
1
update 50 packages
#79
zkamvar
closed
10 months ago
7
Forgot to load DESeq2
#78
csoneson
closed
10 months ago
1
Add figure
#77
csoneson
closed
10 months ago
1
Update order
#76
csoneson
closed
10 months ago
1
Expand episode 1
#75
csoneson
closed
10 months ago
1
fixed typo
#74
jokergoo
closed
11 months ago
1
suggest episode re-order to 5. DE analysis, 6. Exploration of design matrices, 7. Re-visit practice data analysis, 8. Gene set
#73
jdrnevich
closed
10 months ago
1
Extras to add to episode 4
#72
jdrnevich
opened
11 months ago
0
Expand episode 1 to include experimental design & batch effects
#71
jdrnevich
opened
11 months ago
2
Populate "Download Lesson Handout"
#70
jdrnevich
opened
11 months ago
0
Changes 07 31
#69
jdrnevich
closed
12 months ago
1
Update Workflows to Version 0.12.4
#68
carpentries-bot
closed
11 months ago
1
Changes 7 30
#67
jdrnevich
closed
12 months ago
1
add missing libraries to setup
#66
mblue9
closed
12 months ago
2
Changes7 26
#65
jdrnevich
closed
1 year ago
1
Changes7 25
#64
jdrnevich
closed
1 year ago
1
Episode 2 & 3
#63
shbrief
closed
1 year ago
1
fix output errors, add details to DE model and contrast usage
#62
almutlue
closed
1 year ago
1
add packages to setup.md
#61
jokergoo
closed
1 year ago
1
Next