issues
search
deeptools
/
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
227
stars
70
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
chicPlotViewpoint doesn't accept interaction file
#807
ahorvath
opened
2 years ago
0
cannot import name 'LearningWithNoisyLabels' from 'cleanlab.classification'
#806
phil622
closed
2 years ago
2
Error: hicCorrectMatrix correct
#805
hmyh1202
opened
2 years ago
0
hicInterIntraTAD : output value for strongest TAD (which is related with highly expressed genes) in the sample?
#804
JungWoongJae
opened
2 years ago
0
`list index out of range` of `hicMergeDomains`
#803
shenlinyong
opened
2 years ago
1
hicPCA ValueError
#802
14stutzmanav
opened
2 years ago
1
cannot see converted .mcool in Higlass
#801
TakatoG
opened
2 years ago
0
hicPlotMatrix killed
#800
Zheng19w
opened
2 years ago
3
multiple enzymes and multiple overhang
#799
yinshiyi
opened
2 years ago
1
Having Issues using HiCExplorer with .hic files generated from Juicer v2.0
#798
tonyjhlam
opened
2 years ago
9
`hicInterIntraTAD` not working on matrices generated by `hicSumMatrices`
#797
sebastian-gregoricchio
closed
1 year ago
1
hicMergeMatrixBins is not working properly with cool format
#796
DonQwerty
opened
2 years ago
1
What are the differences of the pearson matrix generated by hicPCA and hicTransform?
#795
qiuyixmm
opened
2 years ago
0
What are the differences of the pearson matrix generated by hicPCA and hicTransform?
#794
qiuyixmm
closed
2 years ago
0
Error in setting hicPlotMatrix --vMin/--vMax
#793
sebastian-gregoricchio
opened
2 years ago
4
Use only the PCA functionality from hicPCA?
#792
ArielPaulson
opened
2 years ago
0
hicQC on matrices from hicSumMatrices
#791
csijcs
opened
2 years ago
0
hicMergeDomains bug: `list index out of range`
#790
cgirardot
opened
2 years ago
10
conda install issues
#789
decarlin
opened
2 years ago
4
Related to hicInterIntraTAD
#788
ccmeth
opened
2 years ago
0
hicMergeMatrixBins changes the chr size
#787
cgirardot
opened
2 years ago
12
hicConvertFormat hicpro to h5, warning and job killed
#786
TheCatalyticMicroChip
closed
2 years ago
4
Feature request: User specification of y-axis range in hicPlotDistVsCounts
#785
kalavattam
opened
2 years ago
0
hicAdjustMatrix ValueError: could not convert integer scalar
#784
cgirardot
opened
2 years ago
2
Clarifying hicInterIntraTAD
#783
benayang
opened
2 years ago
1
hicCorrelate issue
#782
raquelsofi
opened
2 years ago
6
Pearson correlation matrix
#781
BenxiaHu
opened
2 years ago
1
How to use hicConvertFormat to get HicPro format file
#780
DRosen1996
opened
2 years ago
2
installation through bioconda not working
#779
NuriaDiaz
closed
2 years ago
6
How to list several chromosomes in hicConvertFormat
#778
hiroyukikato911
opened
2 years ago
2
Sorting error with bwa Hi-C mode aligned files
#777
Norbittner
opened
2 years ago
5
Hicexplorer and py38 with conda
#776
giuliospinozzi
opened
2 years ago
11
"HiCMatrix does not exist" error when using hicMergeMatrixBins
#775
husseinao
closed
2 years ago
2
HiCBrowser Compatibility
#774
matanel-y
opened
2 years ago
4
Error with hicFindTADs
#773
spiderzbh
opened
2 years ago
3
How to filter the results from `hicDifferentialTAD` based in p-value and W values?
#772
Linhua-Sun
opened
2 years ago
1
hicHyperoptDetectLoops
#771
zhanglp996
closed
2 years ago
1
hicInterIntraTAD: ZeroDivisionError: division by zero
#770
mdozmorov
opened
2 years ago
3
Hicexplorer with Micro-C analysis
#769
xl5525
opened
2 years ago
1
Joachimwolff mamba
#768
joachimwolff
closed
9 months ago
1
Installation error
#767
blessyantony9
closed
2 years ago
3
Interpretation of Insulation Score
#766
StephenRicher
opened
2 years ago
3
[BUG REPORT] hicCorrelate
#765
jianglinghan
opened
2 years ago
1
hicplotTAD error
#764
wushyer
closed
2 years ago
28
TAD scores are different in bm and bedgraph files
#763
benayang
opened
2 years ago
2
HDF5ExtError: HDF5 error back trace
#762
clsteam
opened
2 years ago
4
replace obs/exp in hicAggregate with ones of those in hicexplorer
#761
LeilyR
opened
2 years ago
0
Outdated version in PyPI
#760
vejnar
opened
2 years ago
1
hicCorrectMatrix error message (numpy.core._exceptions.MemoryError)
#759
e-lerat
closed
2 years ago
1
hicAggregateContacts --mode inter-chr issue
#758
Drosophilid
opened
2 years ago
7
Previous
Next