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HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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mamba/conda installation hicexplorer>=3.5 on Red Hat
#855
vmukhina
opened
1 year ago
0
How to differ the loops we detect from exp and ctl?
#854
wikk-chy
opened
1 year ago
1
Incompatibility issue with cooler=0.9.1
#853
JSegueni
opened
1 year ago
5
Question about normalization and correction of MicroC data
#852
NMaziak
opened
1 year ago
0
hicFindTADs : AttributeError 'NoneType' object has no attribute 'cut_intervals'
#851
matteozoia4
closed
1 year ago
0
hicAdjustMatrix generates non-regular cooler files
#850
lldelisle
opened
1 year ago
0
hicexplorer attributeerrora: 'styler' object has no attribute 'render'
#849
xfcypeng
opened
1 year ago
2
duplicate identifiers - chic tools
#848
ralfgilsbach
opened
1 year ago
0
hicBuildMatrix error
#847
linkous123
opened
1 year ago
4
hic ERROR:hicmatrix.HiCMatrix:Index error
#846
raquelsofi
opened
1 year ago
1
hicaggregatecontacts | CTCF and RAD21
#845
odovgusha
opened
1 year ago
0
QUESTION: hicAggregateContacts values?
#844
jaclyn-marie
closed
1 year ago
0
hicConvertFormat from cool file to hicpro file
#843
zmbiolab
opened
1 year ago
0
Question about TADs on fusion region
#842
YPGG1234
opened
1 year ago
0
average plot
#841
KaurKaram
opened
1 year ago
0
hicPlotTADs:ValueError
#840
songxh1996
closed
1 year ago
9
hicMergeDomains throws IndexError: list index out of range
#839
agata-sm
opened
1 year ago
1
.hic file cannot be recognized by Galaxy HiCexplorer
#838
Moonriver1988
opened
1 year ago
0
hicPlotTADs error: bw file not displayed
#837
aminakur
opened
1 year ago
2
HicPlotDistVSCount fail : local variable 'lgd' referenced before assignement
#836
Mia0509
opened
1 year ago
5
HicPlotTADs Hi-C contacts not being plotted
#835
aminakur
opened
1 year ago
2
Error when running hicDetectLoops: AttributeError: module 'numpy' has no attribute 'object'
#834
hero-outman
closed
1 year ago
2
HiCFindTADs output missing files
#833
aminakur
opened
1 year ago
0
Error in process multiple datasets of hicConvertFormat
#832
skytguuu
opened
1 year ago
0
hicTransform for matrix arithmetic?
#831
jaclyn-marie
closed
1 year ago
3
Add line to save the polarization_ratio in a text file
#830
contessoto
closed
8 months ago
1
3.7.2 hicPCA produces extreme eigenvalues
#829
xscapintime
opened
1 year ago
5
Unable to create group error introduced by line 297 of chicViewpoint.py
#828
jianhong
opened
1 year ago
0
hicAggregateContacts: Compare result between conditions
#827
Lucas446
opened
1 year ago
0
hicAggregateContacts: FileContactPairs uncomplete
#826
Lucas446
closed
1 year ago
2
hicAggregateContacts: list index out of range
#825
Lucas446
closed
1 year ago
2
Confuse about bin size in hicAggregateContacts
#824
hanshanmengqi
closed
1 year ago
2
unboundLocalError: local variable 'out_bam_file' referenced before assignment
#823
distilledchild
closed
1 year ago
1
Plotting the TADs identified using TADCompare()
#822
MurliNair
closed
1 year ago
1
UnicodeDecodeError When running hicConvertFormat to convert HiC to Cool format
#821
ashishjain1988
opened
1 year ago
11
hicAggregateContacts
#820
wbszhu
opened
1 year ago
0
` hicCorrectMatrix correct` issue
#819
PanZiwei
opened
1 year ago
0
hicAverageRegions local variable 'viewpoint' referenced before assignment
#818
sjquon
closed
1 year ago
1
`hicDifferentialTAD` doesn't work with example cool input
#817
PanZiwei
opened
1 year ago
0
How to use HiCExplorer for TAD analysis with HiCPro input
#816
PanZiwei
closed
1 year ago
0
resolution hicPlotTADs
#815
MarineBergot
closed
1 year ago
14
Use sumMatrices to implement scatter-gather technique for cloud deployment
#814
biofilos
opened
1 year ago
0
Issue converting GInteractions object into InteractionSet
#813
jb621-star
opened
1 year ago
0
hicAggregateContacts key error "data"
#812
dgoekbuget
closed
1 year ago
1
HiCExplorer compatability with python 3.10?
#811
torchij
opened
1 year ago
2
can't use hicDetectLoops
#810
jrw510
opened
1 year ago
6
hicConvertFormat convert iced matrix
#809
BenxiaHu
opened
1 year ago
0
hicConvertFormat 2D-text to cool generates spurious pairs
#808
leomorelli
opened
2 years ago
3
chicPlotViewpoint doesn't accept interaction file
#807
ahorvath
opened
2 years ago
0
cannot import name 'LearningWithNoisyLabels' from 'cleanlab.classification'
#806
phil622
closed
2 years ago
2
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