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geneontology
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amigo
AmiGO is the public interface for the Gene Ontology.
http://amigo.geneontology.org
BSD 3-Clause "New" or "Revised" License
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Possible closure issue for GP in GOLr instance golr.berkeleybop.org (draft - don't read yet)
#611
lpalbou
closed
3 years ago
2
Docker support
#610
nathanweeks
closed
3 years ago
5
Filters are not applied to searches even if they appear in the URL
#609
ValWood
closed
2 months ago
5
XSS vulnerability in reference
#608
kltm
closed
3 years ago
1
web visibility of GO xrefs list
#607
zhilianghu
opened
3 years ago
9
XSS vulnerability in browse
#606
kltm
closed
3 years ago
0
WIP: Update grebe.yaml
#605
kltm
opened
3 years ago
0
[quick] Add grebe template: compare two gene sets for two terms
#604
cmungall
opened
3 years ago
1
Matrix tool: please supply maximum number of allowed terms
#603
ValWood
opened
3 years ago
3
DNA binding transcription factors. MAJOR ISSUE
#602
ValWood
opened
3 years ago
29
Can we reroute MGI:XXX to MGI:MGI:XXX
#601
lpalbou
closed
8 months ago
2
Some relations are only shown by their IDs
#600
pgaudet
closed
4 years ago
2
Removal of db-xrefs.yaml in amigo
#599
lpalbou
opened
4 years ago
15
AmiGO stats page has no data
#598
hattrill
closed
4 years ago
6
Bump jquery from 3.3.1 to 3.5.0 in /javascript/npm/bbop-widget-set
#597
dependabot[bot]
opened
4 years ago
0
Bump jquery from 3.3.1 to 3.5.0
#596
dependabot[bot]
opened
4 years ago
0
Bump minimist from 1.2.0 to 1.2.3
#595
dependabot[bot]
closed
2 years ago
1
Protein Ontology links are not resolving
#594
ukemi
closed
4 years ago
3
Matrix rules, some exceptions being ignored
#593
ValWood
opened
4 years ago
1
Add line to substitute "+" for space to fix search and fix
#592
elserj
closed
4 years ago
9
Matrix tool results not avaiable
#591
ValWood
closed
4 years ago
6
Can no longer search with UniPRot accession numbers
#590
ValWood
closed
4 years ago
2
Amigo broken?
#589
ValWood
closed
4 years ago
3
Amigo not retrieving gene products
#588
ValWood
closed
4 years ago
2
Date to 2020
#587
lpalbou
closed
4 years ago
3
Update Copyright 1999-2018 in AmiGO
#586
pgaudet
closed
4 years ago
4
In bookmarked searches with spaces, they are rendered as %20, preventing the search from running properly
#585
kltm
closed
4 years ago
10
Create link outs to ECO pages for evidence codes
#583
vanaukenk
opened
4 years ago
2
AmiGO linker is not resolving Xenbase or ECO
#581
vanaukenk
opened
4 years ago
4
In some cases, AmiGO-loaded ontologies seem sub-optimal
#582
kltm
opened
4 years ago
26
Direct annotations filter does not appear to be working
#580
ValWood
closed
4 years ago
3
Replace software page with link to GO Tools page
#579
pgaudet
opened
4 years ago
9
Bug display of annotation extension
#577
pgaudet
opened
4 years ago
0
XSS vulnerability in Gannet
#576
kltm
closed
3 years ago
4
XSS vulnerability in search filters
#575
kltm
closed
3 years ago
2
Decommission GOOSE
#574
kltm
opened
5 years ago
1
Decommission 1.x
#573
kltm
closed
5 years ago
1
Filter for UCL as source
#571
RLovering
closed
5 years ago
4
Some AspGD taxon data appears without a label
#570
ValWood
opened
5 years ago
12
Add IEA filter to Matrix tool
#569
ValWood
opened
5 years ago
5
KEGG links missing
#568
pgaudet
closed
5 years ago
6
UniProtKB IDs are showing up as source RNA central
#567
cmungall
closed
5 years ago
5
Update old "help" URLs to something functional
#566
kltm
closed
5 years ago
2
"Data health" link needs to be replaced or removed
#565
pgaudet
closed
3 years ago
9
Remove unnecessary(?) db-xrefs.yaml in external/
#564
kltm
opened
5 years ago
0
Update db-xrefs.yaml
#563
lpalbou
closed
5 years ago
1
Fixes #556
#562
cmungall
closed
5 years ago
1
PTHR families showing up strangly in AmiGO
#561
pgaudet
closed
5 years ago
2
AmiGO missing some IEAs
#560
pgaudet
opened
5 years ago
0
Non-GO terms prioritized in general search
#559
ValWood
opened
5 years ago
18
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