issues
search
morinlab
/
GAMBLR
Set of standardized functions to operate with genomic data
https://morinlab.github.io/GAMBLR/
MIT License
3
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Lots of warnings when running get_ssm_by_sample example in the vignette
#156
rdmorin
closed
1 year ago
0
Handling of dependencies
#155
Kdreval
closed
1 year ago
3
randomForest dependency is not auto-installed
#154
rdmorin
closed
1 year ago
1
Return a useful error when config is missing
#153
Kdreval
closed
1 year ago
3
Adding packages to and tidy DESCRIPTION file + hotfix for get manta_sv_by_sample
#152
mattssca
closed
1 year ago
5
plotly dependency is not auto-installed
#151
rdmorin
closed
1 year ago
5
Handling of bundled data through designated separate repo
#150
Kdreval
closed
1 year ago
7
Allow version-centric use of bundled data
#149
Kdreval
closed
7 months ago
2
GAMBLR Improvements
#148
mattssca
closed
1 year ago
7
Collapse redundant overlapping aSHM regions
#147
rdmorin
closed
7 months ago
6
Resolving issues, bugs, and making reproducible installation
#146
Kdreval
closed
1 year ago
11
Is genes an optional or required argument for prettyForestPlot + other prettyForestPlot issues
#145
rdmorin
closed
1 year ago
6
bug in get_sample_cn_segments
#144
mattssca
closed
1 year ago
1
Add new functions for loading Manta SV from individual files instead of merges
#143
rdmorin
closed
1 year ago
5
GAMBLR hotfixes and improvements.
#142
mattssca
closed
1 year ago
0
classify FLs functionality + bug fix
#141
Kdreval
closed
1 year ago
5
Bug in ashm_rainbow_plot
#140
mattssca
closed
1 year ago
0
Remove hardcoding in collate_csr_results
#139
rdmorin
closed
7 months ago
1
collate_igblast_results function
#138
mannycruz
opened
1 year ago
2
GAMBLR OveRhaul
#137
rdmorin
closed
1 year ago
1
get_cn_segments is broken
#136
rdmorin
closed
1 year ago
1
removing redundant line from config (tidy_expression_file)
#135
mattssca
closed
1 year ago
3
assign_cn_to_ssm is broken
#134
mattssca
closed
1 year ago
0
collate_results fix
#133
mattssca
closed
1 year ago
3
Collate_results is broken
#132
rdmorin
closed
1 year ago
3
suppress annoying readr messages
#131
rdmorin
closed
1 year ago
1
Do-over of last PR
#130
rdmorin
closed
1 year ago
0
update lymphoma genes
#129
rdmorin
closed
1 year ago
2
GAMBLR documentation formatting is incorrect for many functions
#128
rdmorin
closed
1 year ago
7
get_gambl_metadata relies on files that aren't in the repo
#127
rdmorin
closed
1 year ago
1
`annotate_driver_ssm` has the wrong argument name
#126
lkhilton
closed
1 year ago
1
get_ssm_by_sample updates needed
#125
rdmorin
closed
1 year ago
1
Bug fix: bam_available wasn't being filtered on conditionally
#124
lkhilton
closed
1 year ago
0
Make `get_gene_expression` work for non-`morinlab` users
#123
lkhilton
closed
1 year ago
1
Fix LymphGen tidy class order
#122
lkhilton
closed
1 year ago
2
Object "genes" not found in get_gene_expression
#121
mattssca
closed
1 year ago
0
Fixes for Lymphgen in get_gambl_metadata and collate_lymphgen
#120
rdmorin
closed
1 year ago
2
update estimate_purity function to set the assume_diploid parameter t…
#119
kristenadaley
closed
1 year ago
0
`fancy_qc_plot` bugs
#118
lkhilton
closed
1 year ago
10
Adding error messages to functions that reads from local files.
#117
mattssca
closed
1 year ago
4
New RF, new function, update to splendidHeatmap, and bug fixes
#116
Kdreval
closed
1 year ago
0
Fancy Plots + QoL Updates
#115
mattssca
closed
1 year ago
1
add sample set md5 digest functionality for reproducibility
#114
rdmorin
closed
1 year ago
1
Issues with the `collate_sbs_results` part of `collate_results`
#113
lkhilton
closed
7 months ago
1
`collate_results` has unexpected behaviour on join_with_full_metadata
#112
lkhilton
closed
1 year ago
0
Revert "new line"
#111
rdmorin
closed
1 year ago
3
New plotting functions and various improvements.
#110
mattssca
closed
2 years ago
2
Updated README with instructions on how to run run GAMBLR remote + other QoL updates (messages, warnings etc.)
#109
mattssca
closed
2 years ago
0
hot-fix for get_ssm_by_region (and added plotting functions)
#108
mattssca
closed
2 years ago
0
fix new bugs associated with ssh_session
#107
rdmorin
closed
2 years ago
1
Previous
Next