YuSugihara QTL-seq issues

YuSugihara / QTL-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype

45 stars 24 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bcftools mpileup error

#47 Tarun-PAU opened 5 months ago
0
QTLplots have missing chromosomes

#46 StephenSiazon opened 10 months ago
0
qtlseq qtl-seq error occur

#45 HaNjIhEoN1 opened 10 months ago
0
assert not _current_process._config.get('daemon')

#43 jiuhai opened 1 year ago
1
Raw data for plotting with ggplot

#42 caiobrunharo closed 10 months ago
1
During alignment Im encountering a error [main_samview] fail to read the header from "-".

#41 shashidhar111 closed 10 months ago
4
Errors related to multiprocessing

#40 Abieskawa opened 1 year ago
1
Error for samtools error info

#38 Chuhao-Li opened 1 year ago
0
QTL-seq produced unusual BAM file

#37 mhw05727 opened 1 year ago
0
Regarding visualization of INDELs with delta-SNP-index of 1

#36 minh-liem opened 1 year ago
1
Error with snpEff

#35 SowmyaPulapet opened 2 years ago
0
samtools sort error

#34 Deeptirao closed 1 year ago
3
SystemError: tile cannot extend outside image

#33 highwire2021 closed 1 year ago
3
FileNotFoundError: [Errno 2] No such file or directory: 'QTLseq/snp_index.tsv.temp'

#32 WangWaud opened 2 years ago
3
Dear Professor，why QTL-seq v1.4.4 can not be download?

#31 ZhouTaoWang closed 2 years ago
1
qtr-seq with pseudo test cross

#30 sandipmkale closed 1 year ago
0
No smooth SNP-index line in the "bulk1_SNPindex.png,bulk2_SNPindex.png and delta_SNPindex.png"

#27 jigaoxiang opened 2 years ago
5
Whether qtl-seq can run in Windows, under the condition that all dependencies are installed.

#26 Nuvolar closed 2 years ago
0
Image size related error

#25 shanmugavadivelps closed 1 year ago
5
getting error while generating vcf

#24 shanmugavadivelps opened 3 years ago
2
Support for csi index

#23 harmeet1990 closed 1 year ago
1
QTLseq package not found error

#22 Nikhilasai1223 closed 2 years ago
1
parent.unsorted.bam not found

#21 Brent-Saylor-Canopy closed 3 years ago
2
QTLplot error calculating snp index error

#20 Brent-Saylor-Canopy closed 3 years ago
1
!!ERROR!! trimmomatic PE -threads 2 -phred33, how to soloution?

#19 haohui123 closed 3 years ago
1
How to use this with two parent and two bulk?

#18 haohui123 closed 3 years ago
7
Lower delta SNP reported as delta SNP=1

#17 Deeptirao closed 3 years ago
7
RuntimeError and EOFError

#16 Yoshio-yoshioka closed 3 years ago
1
ERROR IN running SnpEff

#15 Vamshi02 closed 1 year ago
4
QTLseq plot error

#14 Haritha-gen closed 3 years ago
1
Query on the parent sequence input

#13 gokulan-15 closed 3 years ago
2
SNP index calculation error

#12 praneetha92 closed 3 years ago
14
samtools error

#11 Deeptirao closed 3 years ago
1
getting error

#10 shanmugavadivelps closed 3 years ago
1
Program Killed

#9 KuldeepKumarSoni closed 3 years ago
1
!!ERROR!! bcftools mpileup

#8 hannyxie closed 3 years ago
2
Suggestion

#7 mdga337 closed 3 years ago
1
!!ERROR!! tabix -f -p vcf qtl-seq_result2/30_vcf/qtlseq.Chr1.vcf.gz >> qtl-seq_result2/log/tabix.Chr1.log 2>&1

#6 kmosi0 closed 4 years ago
1
can you help me ?

#5 liuxiaowei0401 closed 4 years ago
1
Add BC population structure.

#4 xiekunwhy closed 4 years ago
1
Citation of Huang et al. (2019)

#3 dinosaurur closed 4 years ago
1
[W::bam_merge_core2] No @HD tag found

#2 InfoSuresh closed 4 years ago
1
Can I run your pipeline without parent sample?

#1 xiekunwhy closed 4 years ago
1